Hb_001751_050

Information

Type -
Description -
Location Contig1751: 85295-86853
Sequence    

Annotation

kegg
ID pmum:103319195
description probable phytol kinase 1, chloroplastic
nr
ID XP_012090214.1
description PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LZ76
description Phytol kinase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE5 PE=1 SV=1
trembl
ID A0A067LK35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01555 PE=4 SV=1
Gene Ontology
ID GO:0010276
description probable phytol kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16760: 85278-86892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001751_050 0.0 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
2 Hb_002093_020 0.0218710635 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
3 Hb_000531_100 0.0661914424 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
4 Hb_013726_060 0.0665748886 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
5 Hb_005276_080 0.0725096099 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
6 Hb_001766_160 0.072606424 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
7 Hb_000008_160 0.0730962203 - - carboxy-lyase, putative [Ricinus communis]
8 Hb_005649_060 0.0733553545 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
9 Hb_000115_020 0.0832807421 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
10 Hb_009193_020 0.0834959841 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
11 Hb_001717_060 0.0847559981 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
12 Hb_000625_080 0.0887418115 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
13 Hb_006665_020 0.0887819023 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
14 Hb_087599_010 0.0896693063 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
15 Hb_117807_020 0.0897666295 - - methyltransferase, putative [Ricinus communis]
16 Hb_000510_180 0.089960623 - - unknown [Lotus japonicus]
17 Hb_001006_160 0.0900523773 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000128_040 0.0904441757 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
19 Hb_001322_120 0.0908386619 - - nutrient reservoir, putative [Ricinus communis]
20 Hb_001006_150 0.0919281328 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001751_050 Hb_001751_050 Hb_002093_020 Hb_002093_020 Hb_001751_050--Hb_002093_020 Hb_000531_100 Hb_000531_100 Hb_001751_050--Hb_000531_100 Hb_013726_060 Hb_013726_060 Hb_001751_050--Hb_013726_060 Hb_005276_080 Hb_005276_080 Hb_001751_050--Hb_005276_080 Hb_001766_160 Hb_001766_160 Hb_001751_050--Hb_001766_160 Hb_000008_160 Hb_000008_160 Hb_001751_050--Hb_000008_160 Hb_002093_020--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_002093_020--Hb_087599_010 Hb_002093_020--Hb_001766_160 Hb_002093_020--Hb_000531_100 Hb_002093_020--Hb_005276_080 Hb_000531_100--Hb_013726_060 Hb_001292_030 Hb_001292_030 Hb_000531_100--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_000531_100--Hb_002529_120 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_001322_120 Hb_001322_120 Hb_000531_100--Hb_001322_120 Hb_000531_100--Hb_005276_080 Hb_146225_020 Hb_146225_020 Hb_013726_060--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_013726_060--Hb_000719_030 Hb_001717_060 Hb_001717_060 Hb_013726_060--Hb_001717_060 Hb_013726_060--Hb_001766_160 Hb_013726_060--Hb_002529_120 Hb_001006_160 Hb_001006_160 Hb_005276_080--Hb_001006_160 Hb_006665_020 Hb_006665_020 Hb_005276_080--Hb_006665_020 Hb_000450_050 Hb_000450_050 Hb_005276_080--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_005276_080--Hb_000589_340 Hb_000676_320 Hb_000676_320 Hb_005276_080--Hb_000676_320 Hb_001766_160--Hb_001322_120 Hb_005649_060 Hb_005649_060 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180 Hb_001006_150 Hb_001006_150 Hb_001766_160--Hb_001006_150 Hb_000185_010 Hb_000185_010 Hb_000008_160--Hb_000185_010 Hb_002870_070 Hb_002870_070 Hb_000008_160--Hb_002870_070 Hb_002762_050 Hb_002762_050 Hb_000008_160--Hb_002762_050 Hb_000008_160--Hb_087599_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.972436 23.7745 5.11243 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.763005 31.6817

CAGE analysis