Hb_001752_030

Information

Type -
Description -
Location Contig1752: 61296-71006
Sequence    

Annotation

kegg
ID rcu:RCOM_1628950
description RNA polymerase II ctd phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012078975.1
description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
swissprot
ID Q00IB6
description RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
trembl
ID A0A067KJ07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13822 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii c-terminal domain phosphatase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16768: 61468-82419 , PASA_asmbl_16769: 63231-82419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001752_030 0.0 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
2 Hb_000803_110 0.0920650511 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
3 Hb_000465_470 0.0978013182 - - unknown [Picea sitchensis]
4 Hb_000832_090 0.0978497737 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
5 Hb_002351_020 0.0986376041 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
6 Hb_007108_030 0.0989750861 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000032_490 0.1011144232 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
8 Hb_000592_080 0.1018209846 - - PREDICTED: thymidylate kinase [Jatropha curcas]
9 Hb_011139_030 0.1031439514 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
10 Hb_000195_020 0.1074885776 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
11 Hb_004204_080 0.107620792 - - diacylglycerol kinase, theta, putative [Ricinus communis]
12 Hb_000906_060 0.1077062165 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
13 Hb_002587_020 0.1083800296 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000422_140 0.1090217883 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
15 Hb_020665_030 0.1093257176 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000671_110 0.109409512 - - hypothetical protein JCGZ_23794 [Jatropha curcas]
17 Hb_008643_060 0.1106445621 - - unnamed protein product [Coffea canephora]
18 Hb_000173_510 0.1106906276 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
19 Hb_004701_030 0.1108285404 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
20 Hb_075481_030 0.1119962716 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001752_030 Hb_001752_030 Hb_000803_110 Hb_000803_110 Hb_001752_030--Hb_000803_110 Hb_000465_470 Hb_000465_470 Hb_001752_030--Hb_000465_470 Hb_000832_090 Hb_000832_090 Hb_001752_030--Hb_000832_090 Hb_002351_020 Hb_002351_020 Hb_001752_030--Hb_002351_020 Hb_007108_030 Hb_007108_030 Hb_001752_030--Hb_007108_030 Hb_000032_490 Hb_000032_490 Hb_001752_030--Hb_000032_490 Hb_011848_010 Hb_011848_010 Hb_000803_110--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000803_110--Hb_003091_010 Hb_000976_320 Hb_000976_320 Hb_000803_110--Hb_000976_320 Hb_000394_190 Hb_000394_190 Hb_000803_110--Hb_000394_190 Hb_012799_110 Hb_012799_110 Hb_000803_110--Hb_012799_110 Hb_000072_140 Hb_000072_140 Hb_000803_110--Hb_000072_140 Hb_001541_260 Hb_001541_260 Hb_000465_470--Hb_001541_260 Hb_106552_050 Hb_106552_050 Hb_000465_470--Hb_106552_050 Hb_000236_100 Hb_000236_100 Hb_000465_470--Hb_000236_100 Hb_000663_040 Hb_000663_040 Hb_000465_470--Hb_000663_040 Hb_002301_220 Hb_002301_220 Hb_000465_470--Hb_002301_220 Hb_000465_470--Hb_000032_490 Hb_000732_120 Hb_000732_120 Hb_000832_090--Hb_000732_120 Hb_000832_090--Hb_000032_490 Hb_000832_090--Hb_002351_020 Hb_001347_040 Hb_001347_040 Hb_000832_090--Hb_001347_040 Hb_001377_070 Hb_001377_070 Hb_000832_090--Hb_001377_070 Hb_000959_270 Hb_000959_270 Hb_000832_090--Hb_000959_270 Hb_002351_020--Hb_000032_490 Hb_003029_030 Hb_003029_030 Hb_002351_020--Hb_003029_030 Hb_005489_080 Hb_005489_080 Hb_002351_020--Hb_005489_080 Hb_002686_250 Hb_002686_250 Hb_002351_020--Hb_002686_250 Hb_001408_100 Hb_001408_100 Hb_002351_020--Hb_001408_100 Hb_002150_030 Hb_002150_030 Hb_007108_030--Hb_002150_030 Hb_009411_010 Hb_009411_010 Hb_007108_030--Hb_009411_010 Hb_001797_050 Hb_001797_050 Hb_007108_030--Hb_001797_050 Hb_003428_070 Hb_003428_070 Hb_007108_030--Hb_003428_070 Hb_003506_080 Hb_003506_080 Hb_007108_030--Hb_003506_080 Hb_001866_110 Hb_001866_110 Hb_007108_030--Hb_001866_110 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.75881 7.75346 6.54367 4.01846 16.2062 17.48
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.30774 7.79451 8.65144 3.30096 4.35329

CAGE analysis