Hb_001752_040

Information

Type -
Description -
Location Contig1752: 81656-82207
Sequence    

Annotation

kegg
ID mdm:103429212
description RNA polymerase II C-terminal domain phosphatase-like 4
nr
ID KCW81208.1
description hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CRV1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02580 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii c-terminal domain phosphatase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16768: 61468-82419 , PASA_asmbl_16769: 63231-82419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001752_040 0.0 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
2 Hb_002411_130 0.1202866052 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
3 Hb_000025_050 0.1205434051 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
4 Hb_001767_120 0.1217316781 - - -
5 Hb_106411_010 0.1224962148 - - Ribosomal protein S25 family protein [Theobroma cacao]
6 Hb_019813_010 0.1230114919 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
7 Hb_000803_110 0.125137657 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
8 Hb_175612_010 0.1313502581 transcription factor TF Family: MBF1 orf [Ricinus communis]
9 Hb_033312_140 0.1331077579 - - RNA and export factor-binding family protein [Populus trichocarpa]
10 Hb_002774_070 0.1355866219 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
11 Hb_012132_040 0.1374358817 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
12 Hb_173178_020 0.1391853944 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
13 Hb_031862_180 0.1396376191 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
14 Hb_000159_110 0.1406699534 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
15 Hb_001910_020 0.1414060802 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
16 Hb_000375_030 0.141597943 - - -
17 Hb_002301_260 0.1422047776 - - hypothetical protein MIMGU_mgv1a0031591mg, partial [Erythranthe guttata]
18 Hb_023001_050 0.1436104506 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
19 Hb_150204_010 0.1444438041 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_005714_130 0.1444737977 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_001752_040 Hb_001752_040 Hb_002411_130 Hb_002411_130 Hb_001752_040--Hb_002411_130 Hb_000025_050 Hb_000025_050 Hb_001752_040--Hb_000025_050 Hb_001767_120 Hb_001767_120 Hb_001752_040--Hb_001767_120 Hb_106411_010 Hb_106411_010 Hb_001752_040--Hb_106411_010 Hb_019813_010 Hb_019813_010 Hb_001752_040--Hb_019813_010 Hb_000803_110 Hb_000803_110 Hb_001752_040--Hb_000803_110 Hb_000159_110 Hb_000159_110 Hb_002411_130--Hb_000159_110 Hb_009119_030 Hb_009119_030 Hb_002411_130--Hb_009119_030 Hb_121467_010 Hb_121467_010 Hb_002411_130--Hb_121467_010 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_002411_130--Hb_001767_120 Hb_076874_010 Hb_076874_010 Hb_000025_050--Hb_076874_010 Hb_000025_050--Hb_106411_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_003925_070 Hb_003925_070 Hb_000025_050--Hb_003925_070 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_128998_010 Hb_128998_010 Hb_001767_120--Hb_128998_010 Hb_001767_120--Hb_121467_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010 Hb_106411_010--Hb_076874_010 Hb_106411_010--Hb_003925_070 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_106411_010--Hb_002508_010 Hb_002301_260 Hb_002301_260 Hb_019813_010--Hb_002301_260 Hb_000160_220 Hb_000160_220 Hb_019813_010--Hb_000160_220 Hb_002960_160 Hb_002960_160 Hb_019813_010--Hb_002960_160 Hb_046931_010 Hb_046931_010 Hb_019813_010--Hb_046931_010 Hb_000939_060 Hb_000939_060 Hb_019813_010--Hb_000939_060 Hb_003847_120 Hb_003847_120 Hb_019813_010--Hb_003847_120 Hb_011848_010 Hb_011848_010 Hb_000803_110--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000803_110--Hb_003091_010 Hb_000976_320 Hb_000976_320 Hb_000803_110--Hb_000976_320 Hb_000394_190 Hb_000394_190 Hb_000803_110--Hb_000394_190 Hb_012799_110 Hb_012799_110 Hb_000803_110--Hb_012799_110 Hb_000072_140 Hb_000072_140 Hb_000803_110--Hb_000072_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5845 11.2732 9.65855 14.4886 23.3663 41.3393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.72793 15.206 5.6446 4.15154 4.35162

CAGE analysis