Hb_001754_010

Information

Type -
Description -
Location Contig1754: 2623-5013
Sequence    

Annotation

kegg
ID cam:101496634
description translationally-controlled tumor protein homolog
nr
ID AEH05972.1
description translationally controlled tumor protein [Hevea brasiliensis]
swissprot
ID Q9ZSW9
description Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1
trembl
ID F8SKC4
description TCTP.1 OS=Hevea brasiliensis GN=TCTP PE=2 SV=1
Gene Ontology
ID GO:0005737
description translationally controlled tumor protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16780: 2816-5060
cDNA
(Sanger)
(ID:Location)		 001_K23.ab1: 2839-4729 , 002_B20.ab1: 2841-4801 , 010_I02.ab1: 2843-4728 , 026_H23.ab1: 2841-4731 , 028_I05.ab1: 2839-4731 , 035_E03.ab1: 2839-4733 , 041_M08.ab1: 2839-4769 , 045_I14.ab1: 2818-4729

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_010 0.0 - - translationally controlled tumor protein [Hevea brasiliensis]
2 Hb_001629_100 0.0599481081 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
3 Hb_000120_590 0.0879253684 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
4 Hb_100777_010 0.0977531126 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
5 Hb_130291_010 0.0986423702 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
6 Hb_000333_090 0.0999530633 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
7 Hb_010172_030 0.1019883585 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
8 Hb_008511_110 0.1047979837 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
9 Hb_007594_090 0.105018724 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
10 Hb_000061_330 0.1055058073 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
11 Hb_003680_070 0.1108031841 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
12 Hb_001008_010 0.1121844866 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
13 Hb_008847_020 0.1164662893 - - 40S ribosomal protein S17C [Hevea brasiliensis]
14 Hb_004116_040 0.1185971975 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
15 Hb_000362_210 0.1189994542 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
16 Hb_000722_040 0.1191467649 - - -
17 Hb_000184_050 0.1192794799 - - NOI, putative [Ricinus communis]
18 Hb_000479_180 0.123453926 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002781_020 0.1238951206 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
20 Hb_000815_260 0.1241120143 - - 50S ribosomal protein L32pA [Hevea brasiliensis]

Gene co-expression network

sample Hb_001754_010 Hb_001754_010 Hb_001629_100 Hb_001629_100 Hb_001754_010--Hb_001629_100 Hb_000120_590 Hb_000120_590 Hb_001754_010--Hb_000120_590 Hb_100777_010 Hb_100777_010 Hb_001754_010--Hb_100777_010 Hb_130291_010 Hb_130291_010 Hb_001754_010--Hb_130291_010 Hb_000333_090 Hb_000333_090 Hb_001754_010--Hb_000333_090 Hb_010172_030 Hb_010172_030 Hb_001754_010--Hb_010172_030 Hb_001008_010 Hb_001008_010 Hb_001629_100--Hb_001008_010 Hb_001629_100--Hb_130291_010 Hb_001629_100--Hb_000120_590 Hb_098315_120 Hb_098315_120 Hb_001629_100--Hb_098315_120 Hb_001629_100--Hb_100777_010 Hb_008511_110 Hb_008511_110 Hb_000120_590--Hb_008511_110 Hb_148209_120 Hb_148209_120 Hb_000120_590--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_000120_590--Hb_005398_030 Hb_000120_590--Hb_130291_010 Hb_000087_020 Hb_000087_020 Hb_100777_010--Hb_000087_020 Hb_001235_070 Hb_001235_070 Hb_100777_010--Hb_001235_070 Hb_000362_210 Hb_000362_210 Hb_100777_010--Hb_000362_210 Hb_100777_010--Hb_000333_090 Hb_001369_050 Hb_001369_050 Hb_100777_010--Hb_001369_050 Hb_002259_150 Hb_002259_150 Hb_100777_010--Hb_002259_150 Hb_000184_050 Hb_000184_050 Hb_130291_010--Hb_000184_050 Hb_012265_010 Hb_012265_010 Hb_130291_010--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_000975_110 Hb_000975_110 Hb_130291_010--Hb_000975_110 Hb_084849_020 Hb_084849_020 Hb_000333_090--Hb_084849_020 Hb_000333_090--Hb_010172_030 Hb_000333_090--Hb_001369_050 Hb_000333_090--Hb_000362_210 Hb_002214_050 Hb_002214_050 Hb_000333_090--Hb_002214_050 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_010172_030--Hb_000362_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
342.771 97.594 29.8752 212.696 270.176 887.177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1347.47 1050.39 644.433 343.269 60.845

CAGE analysis