Hb_001754_060

Information

Type -
Description -
Location Contig1754: 46219-47601
Sequence    

Annotation

kegg
ID rcu:RCOM_0681050
description Xyloglucan 6-xylosyltransferase, putative (EC:2.4.2.39)
nr
ID XP_002516919.1
description Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
swissprot
ID O22775
description Xyloglucan 6-xylosyltransferase 2 OS=Arabidopsis thaliana GN=XXT2 PE=1 SV=1
trembl
ID B9RT50
description Xyloglucan 6-xylosyltransferase, putative OS=Ricinus communis GN=RCOM_0681050 PE=4 SV=1
Gene Ontology
ID GO:0005794
description xyloglucan 6-xylosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 050_G01.ab1: 47597-47828

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_060 0.0 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
2 Hb_002289_150 0.1034394342 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
3 Hb_017159_010 0.1195593062 - - -
4 Hb_003090_160 0.1227173409 - - -
5 Hb_000203_270 0.1262077081 - - alpha-xylosidase, putative [Ricinus communis]
6 Hb_000797_060 0.1268365244 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_000523_030 0.1285945538 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
8 Hb_000138_060 0.1289302889 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
9 Hb_000300_230 0.129169276 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
10 Hb_004987_020 0.1304868979 - - -
11 Hb_017948_030 0.1318954439 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
12 Hb_000200_170 0.1322668542 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
13 Hb_002217_320 0.134739273 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
14 Hb_001347_050 0.1369402926 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_001133_010 0.1382632044 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012762_060 0.1385624976 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
17 Hb_011828_010 0.1403457801 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
18 Hb_001675_320 0.1414946358 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
19 Hb_005539_310 0.1454293056 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
20 Hb_002849_070 0.1491832991 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001754_060 Hb_001754_060 Hb_002289_150 Hb_002289_150 Hb_001754_060--Hb_002289_150 Hb_017159_010 Hb_017159_010 Hb_001754_060--Hb_017159_010 Hb_003090_160 Hb_003090_160 Hb_001754_060--Hb_003090_160 Hb_000203_270 Hb_000203_270 Hb_001754_060--Hb_000203_270 Hb_000797_060 Hb_000797_060 Hb_001754_060--Hb_000797_060 Hb_000523_030 Hb_000523_030 Hb_001754_060--Hb_000523_030 Hb_000138_060 Hb_000138_060 Hb_002289_150--Hb_000138_060 Hb_000300_230 Hb_000300_230 Hb_002289_150--Hb_000300_230 Hb_002289_150--Hb_000797_060 Hb_011828_010 Hb_011828_010 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_002250_050 Hb_002250_050 Hb_017159_010--Hb_002250_050 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_011930_100 Hb_011930_100 Hb_003090_160--Hb_011930_100 Hb_000671_030 Hb_000671_030 Hb_003090_160--Hb_000671_030 Hb_001675_320 Hb_001675_320 Hb_003090_160--Hb_001675_320 Hb_003090_160--Hb_000523_030 Hb_003777_130 Hb_003777_130 Hb_003090_160--Hb_003777_130 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000203_270--Hb_000200_170 Hb_001135_030 Hb_001135_030 Hb_000203_270--Hb_001135_030 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_000797_060--Hb_000300_230 Hb_000109_190 Hb_000109_190 Hb_000797_060--Hb_000109_190 Hb_000797_060--Hb_000138_060 Hb_005489_150 Hb_005489_150 Hb_000797_060--Hb_005489_150 Hb_000395_040 Hb_000395_040 Hb_000523_030--Hb_000395_040 Hb_000523_030--Hb_003777_130 Hb_000523_030--Hb_000671_030 Hb_000523_030--Hb_000203_270 Hb_000608_280 Hb_000608_280 Hb_000523_030--Hb_000608_280 Hb_000258_420 Hb_000258_420 Hb_000523_030--Hb_000258_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6297 87.6837 46.9226 149.553 23.6424 28.9395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50387 10.1487 15.6185 23.7304 41.749

CAGE analysis