Hb_001754_070

Information

Type -
Description -
Location Contig1754: 48574-51384
Sequence    

Annotation

kegg
ID pop:POPTR_0026s00250g
description hypothetical protein
nr
ID XP_006389382.1
description hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7E2X1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0026s00250g PE=4 SV=1
Gene Ontology
ID GO:0043231
description heat shock factor-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16793: 45991-47842 , PASA_asmbl_16795: 51364-51621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_070 0.0 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
2 Hb_140543_010 0.0777165022 - - -
3 Hb_130235_010 0.1048811347 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
4 Hb_005667_040 0.1107128463 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
5 Hb_001158_150 0.113009057 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
6 Hb_004125_110 0.1140960358 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
7 Hb_000326_090 0.1173330882 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
8 Hb_003018_050 0.1185195265 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
9 Hb_000003_730 0.1191290594 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
10 Hb_004784_020 0.1225496609 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
11 Hb_172706_030 0.122593613 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
12 Hb_014834_030 0.1277734306 - - -
13 Hb_000584_020 0.1278526723 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
14 Hb_007441_270 0.1284132444 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
15 Hb_000045_250 0.1325320384 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
16 Hb_031089_040 0.1351299666 - - thioredoxin H-type 1 [Hevea brasiliensis]
17 Hb_004502_020 0.1351532066 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
18 Hb_002296_040 0.1352129748 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
19 Hb_000352_290 0.1355227004 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
20 Hb_009554_010 0.1358900512 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_070 Hb_001754_070 Hb_140543_010 Hb_140543_010 Hb_001754_070--Hb_140543_010 Hb_130235_010 Hb_130235_010 Hb_001754_070--Hb_130235_010 Hb_005667_040 Hb_005667_040 Hb_001754_070--Hb_005667_040 Hb_001158_150 Hb_001158_150 Hb_001754_070--Hb_001158_150 Hb_004125_110 Hb_004125_110 Hb_001754_070--Hb_004125_110 Hb_000326_090 Hb_000326_090 Hb_001754_070--Hb_000326_090 Hb_172706_030 Hb_172706_030 Hb_140543_010--Hb_172706_030 Hb_140543_010--Hb_130235_010 Hb_000656_340 Hb_000656_340 Hb_140543_010--Hb_000656_340 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_003018_050 Hb_003018_050 Hb_130235_010--Hb_003018_050 Hb_130235_010--Hb_004125_110 Hb_001054_100 Hb_001054_100 Hb_130235_010--Hb_001054_100 Hb_007735_030 Hb_007735_030 Hb_130235_010--Hb_007735_030 Hb_002686_110 Hb_002686_110 Hb_005667_040--Hb_002686_110 Hb_004709_010 Hb_004709_010 Hb_005667_040--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_005667_040--Hb_014720_040 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_001158_150--Hb_003018_050 Hb_001158_150--Hb_005278_020 Hb_001842_040 Hb_001842_040 Hb_001158_150--Hb_001842_040 Hb_002631_020 Hb_002631_020 Hb_001158_150--Hb_002631_020 Hb_000364_020 Hb_000364_020 Hb_001158_150--Hb_000364_020 Hb_006452_040 Hb_006452_040 Hb_001158_150--Hb_006452_040 Hb_004125_110--Hb_003018_050 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_000083_170 Hb_000083_170 Hb_000326_090--Hb_000083_170 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_005867_020 Hb_005867_020 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45451 0.760867 1.19319 5.73627 1.88431 5.09144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12512 10.0432 2.26358 1.95417 0.956166

CAGE analysis