Hb_001754_130

Information

Type -
Description -
Location Contig1754: 98582-99721
Sequence    

Annotation

kegg
ID rcu:RCOM_0680860
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002516910.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID O82089
description Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1
trembl
ID B9RT41
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_0680860 PE=4 SV=1
Gene Ontology
ID GO:0046872
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_130 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_011994_020 0.176066598 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
3 Hb_000635_100 0.1859106374 - - -
4 Hb_000910_060 0.1964830609 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_001277_010 0.1965776535 - - unknown [Populus trichocarpa]
6 Hb_002972_050 0.1967023531 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000742_220 0.1967280188 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
8 Hb_003968_030 0.1992049749 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000639_010 0.2017808341 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
10 Hb_001894_020 0.2032591587 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP630 [Jatropha curcas]
11 Hb_149507_010 0.2050243521 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
12 Hb_001143_210 0.2061178393 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
13 Hb_001430_040 0.2067505928 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
14 Hb_000186_150 0.2110160486 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
15 Hb_000933_170 0.2137817699 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
16 Hb_032572_010 0.2146191608 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
17 Hb_010264_020 0.214688198 - - unnamed protein product [Vitis vinifera]
18 Hb_004804_010 0.2147392807 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
19 Hb_012395_060 0.214901256 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
20 Hb_001269_660 0.2164153618 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_130 Hb_001754_130 Hb_011994_020 Hb_011994_020 Hb_001754_130--Hb_011994_020 Hb_000635_100 Hb_000635_100 Hb_001754_130--Hb_000635_100 Hb_000910_060 Hb_000910_060 Hb_001754_130--Hb_000910_060 Hb_001277_010 Hb_001277_010 Hb_001754_130--Hb_001277_010 Hb_002972_050 Hb_002972_050 Hb_001754_130--Hb_002972_050 Hb_000742_220 Hb_000742_220 Hb_001754_130--Hb_000742_220 Hb_001894_020 Hb_001894_020 Hb_011994_020--Hb_001894_020 Hb_011930_180 Hb_011930_180 Hb_011994_020--Hb_011930_180 Hb_000903_040 Hb_000903_040 Hb_011994_020--Hb_000903_040 Hb_000964_040 Hb_000964_040 Hb_011994_020--Hb_000964_040 Hb_000309_060 Hb_000309_060 Hb_011994_020--Hb_000309_060 Hb_001430_040 Hb_001430_040 Hb_000635_100--Hb_001430_040 Hb_003968_030 Hb_003968_030 Hb_000635_100--Hb_003968_030 Hb_000639_010 Hb_000639_010 Hb_000635_100--Hb_000639_010 Hb_000186_150 Hb_000186_150 Hb_000635_100--Hb_000186_150 Hb_010264_020 Hb_010264_020 Hb_000635_100--Hb_010264_020 Hb_000635_100--Hb_001277_010 Hb_009252_070 Hb_009252_070 Hb_000910_060--Hb_009252_070 Hb_001269_660 Hb_001269_660 Hb_000910_060--Hb_001269_660 Hb_012395_060 Hb_012395_060 Hb_000910_060--Hb_012395_060 Hb_000103_440 Hb_000103_440 Hb_000910_060--Hb_000103_440 Hb_136408_040 Hb_136408_040 Hb_000910_060--Hb_136408_040 Hb_005295_020 Hb_005295_020 Hb_000910_060--Hb_005295_020 Hb_001104_220 Hb_001104_220 Hb_001277_010--Hb_001104_220 Hb_149507_010 Hb_149507_010 Hb_001277_010--Hb_149507_010 Hb_001277_010--Hb_001269_660 Hb_000941_110 Hb_000941_110 Hb_001277_010--Hb_000941_110 Hb_008441_010 Hb_008441_010 Hb_001277_010--Hb_008441_010 Hb_002259_130 Hb_002259_130 Hb_002972_050--Hb_002259_130 Hb_121624_010 Hb_121624_010 Hb_002972_050--Hb_121624_010 Hb_000110_280 Hb_000110_280 Hb_002972_050--Hb_000110_280 Hb_008253_050 Hb_008253_050 Hb_002972_050--Hb_008253_050 Hb_002972_050--Hb_001104_220 Hb_000742_220--Hb_011930_180 Hb_004242_090 Hb_004242_090 Hb_000742_220--Hb_004242_090 Hb_119044_010 Hb_119044_010 Hb_000742_220--Hb_119044_010 Hb_000193_210 Hb_000193_210 Hb_000742_220--Hb_000193_210 Hb_003097_160 Hb_003097_160 Hb_000742_220--Hb_003097_160 Hb_001357_050 Hb_001357_050 Hb_000742_220--Hb_001357_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0639801 0.158787 0.0251318 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.039101 0.0978274

CAGE analysis