Hb_001754_250

Information

Type -
Description -
Location Contig1754: 156326-158167
Sequence    

Annotation

kegg
ID rcu:RCOM_0680680
description hypothetical protein
nr
ID XP_012083911.1
description PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18860 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dynein beta ciliary

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16809: 156385-158056 , PASA_asmbl_16810: 157717-158092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_250 0.0 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
2 Hb_000134_320 0.0952040644 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
3 Hb_000260_550 0.104533996 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
4 Hb_001143_220 0.1091438489 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
5 Hb_001459_080 0.1126521675 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
6 Hb_168878_010 0.1185534574 - - 60S ribosomal protein L32A [Hevea brasiliensis]
7 Hb_000694_040 0.1288946559 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_004787_060 0.129442665 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
9 Hb_001979_040 0.1311225204 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
10 Hb_000025_230 0.1344548856 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
11 Hb_000264_210 0.1351586914 - - tfiih, polypeptide, putative [Ricinus communis]
12 Hb_004453_170 0.1367926994 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
13 Hb_114893_030 0.137217674 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
14 Hb_000286_070 0.1407635179 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
15 Hb_124953_020 0.1410532834 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
16 Hb_000096_170 0.1425469098 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
17 Hb_003053_010 0.1426259565 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
18 Hb_002518_080 0.1438521019 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
19 Hb_000035_370 0.1443341951 - - conserved hypothetical protein [Ricinus communis]
20 Hb_132840_140 0.1445052155 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]

Gene co-expression network

sample Hb_001754_250 Hb_001754_250 Hb_000134_320 Hb_000134_320 Hb_001754_250--Hb_000134_320 Hb_000260_550 Hb_000260_550 Hb_001754_250--Hb_000260_550 Hb_001143_220 Hb_001143_220 Hb_001754_250--Hb_001143_220 Hb_001459_080 Hb_001459_080 Hb_001754_250--Hb_001459_080 Hb_168878_010 Hb_168878_010 Hb_001754_250--Hb_168878_010 Hb_000694_040 Hb_000694_040 Hb_001754_250--Hb_000694_040 Hb_132840_140 Hb_132840_140 Hb_000134_320--Hb_132840_140 Hb_002686_180 Hb_002686_180 Hb_000134_320--Hb_002686_180 Hb_003053_010 Hb_003053_010 Hb_000134_320--Hb_003053_010 Hb_000134_320--Hb_000260_550 Hb_002811_170 Hb_002811_170 Hb_000134_320--Hb_002811_170 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_007044_130 Hb_007044_130 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_001143_220--Hb_000260_550 Hb_001143_220--Hb_168878_010 Hb_001143_220--Hb_001459_080 Hb_001143_220--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_001143_220--Hb_002783_270 Hb_001459_080--Hb_168878_010 Hb_002374_170 Hb_002374_170 Hb_001459_080--Hb_002374_170 Hb_004787_060 Hb_004787_060 Hb_001459_080--Hb_004787_060 Hb_000025_230 Hb_000025_230 Hb_001459_080--Hb_000025_230 Hb_001459_080--Hb_000260_550 Hb_028841_030 Hb_028841_030 Hb_001459_080--Hb_028841_030 Hb_168878_010--Hb_002374_170 Hb_168878_010--Hb_004787_060 Hb_168878_010--Hb_000025_230 Hb_008112_040 Hb_008112_040 Hb_168878_010--Hb_008112_040 Hb_004934_030 Hb_004934_030 Hb_000694_040--Hb_004934_030 Hb_000000_360 Hb_000000_360 Hb_000694_040--Hb_000000_360 Hb_007477_070 Hb_007477_070 Hb_000694_040--Hb_007477_070 Hb_000694_040--Hb_002374_170 Hb_000000_210 Hb_000000_210 Hb_000694_040--Hb_000000_210 Hb_000694_040--Hb_004787_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.9998 4.61619 12.2189 2.74249 4.39618 5.22851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33584 18.6006 6.48602 6.47863 1.19065

CAGE analysis