Hb_001755_030

Information

Type -
Description -
Location Contig1755: 45415-49113
Sequence    

Annotation

kegg
ID rcu:RCOM_0895280
description D-glycerate 3-kinase, chloroplast precursor, putative (EC:2.7.1.31)
nr
ID XP_011039994.1
description PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
swissprot
ID Q944I4
description D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK PE=1 SV=2
trembl
ID B9RUW3
description D-glycerate 3-kinase, chloroplast, putative OS=Ricinus communis GN=RCOM_0895280 PE=4 SV=1
Gene Ontology
ID GO:0009570
description d-glycerate 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16818: 45437-49261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001755_030 0.0 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
2 Hb_000627_300 0.1353020255 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
3 Hb_001294_030 0.1360247055 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
4 Hb_000152_480 0.1435448714 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
5 Hb_007426_170 0.1507890029 transcription factor TF Family: TCP -
6 Hb_000112_060 0.154726051 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
7 Hb_114861_010 0.1627493211 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
8 Hb_005489_090 0.168767596 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
9 Hb_001792_030 0.1699110162 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
10 Hb_007044_250 0.1707934882 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000754_050 0.1713799372 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
12 Hb_000594_100 0.171476911 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
13 Hb_002150_130 0.1768253366 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
14 Hb_023732_050 0.1773330948 - - aldo-keto reductase, putative [Ricinus communis]
15 Hb_000042_290 0.1781180737 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
16 Hb_001405_090 0.1805680378 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
17 Hb_007694_060 0.1820002235 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
18 Hb_036790_120 0.1821317537 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
19 Hb_003106_170 0.1827650983 - - Endonuclease III, putative [Ricinus communis]
20 Hb_001484_080 0.1832719967 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001755_030 Hb_001755_030 Hb_000627_300 Hb_000627_300 Hb_001755_030--Hb_000627_300 Hb_001294_030 Hb_001294_030 Hb_001755_030--Hb_001294_030 Hb_000152_480 Hb_000152_480 Hb_001755_030--Hb_000152_480 Hb_007426_170 Hb_007426_170 Hb_001755_030--Hb_007426_170 Hb_000112_060 Hb_000112_060 Hb_001755_030--Hb_000112_060 Hb_114861_010 Hb_114861_010 Hb_001755_030--Hb_114861_010 Hb_001124_180 Hb_001124_180 Hb_000627_300--Hb_001124_180 Hb_000176_010 Hb_000176_010 Hb_000627_300--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_000627_300--Hb_005489_090 Hb_002374_300 Hb_002374_300 Hb_000627_300--Hb_002374_300 Hb_002150_130 Hb_002150_130 Hb_000627_300--Hb_002150_130 Hb_005846_030 Hb_005846_030 Hb_000627_300--Hb_005846_030 Hb_001294_030--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_001294_030--Hb_003935_080 Hb_001621_060 Hb_001621_060 Hb_001294_030--Hb_001621_060 Hb_004109_160 Hb_004109_160 Hb_001294_030--Hb_004109_160 Hb_001792_030 Hb_001792_030 Hb_001294_030--Hb_001792_030 Hb_000175_050 Hb_000175_050 Hb_000152_480--Hb_000175_050 Hb_000152_480--Hb_005489_090 Hb_000152_480--Hb_000112_060 Hb_000042_290 Hb_000042_290 Hb_000152_480--Hb_000042_290 Hb_000152_480--Hb_007426_170 Hb_036790_120 Hb_036790_120 Hb_000152_480--Hb_036790_120 Hb_000005_130 Hb_000005_130 Hb_007426_170--Hb_000005_130 Hb_001959_060 Hb_001959_060 Hb_007426_170--Hb_001959_060 Hb_006829_080 Hb_006829_080 Hb_007426_170--Hb_006829_080 Hb_000548_060 Hb_000548_060 Hb_007426_170--Hb_000548_060 Hb_007426_170--Hb_000112_060 Hb_000976_190 Hb_000976_190 Hb_007426_170--Hb_000976_190 Hb_010128_020 Hb_010128_020 Hb_000112_060--Hb_010128_020 Hb_000112_060--Hb_036790_120 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_003029_020 Hb_003029_020 Hb_000112_060--Hb_003029_020 Hb_001484_080 Hb_001484_080 Hb_114861_010--Hb_001484_080 Hb_114861_010--Hb_001792_030 Hb_007044_250 Hb_007044_250 Hb_114861_010--Hb_007044_250 Hb_000189_520 Hb_000189_520 Hb_114861_010--Hb_000189_520 Hb_114861_010--Hb_005489_090 Hb_000110_230 Hb_000110_230 Hb_114861_010--Hb_000110_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72019 2.40546 32.7882 10.5648 4.05859 4.49451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.75858 34.9074 4.36905 6.31018 73.9046

CAGE analysis