Hb_001755_040

Information

Type -
Description -
Location Contig1755: 53431-61080
Sequence    

Annotation

kegg
ID rcu:RCOM_0895300
description cyclin A, putative
nr
ID XP_012073285.1
description PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
swissprot
ID Q9C968
description Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1
trembl
ID A0A067KQB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06229 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16820: 53044-59976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001755_040 0.0 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
2 Hb_002232_310 0.0868270082 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
3 Hb_004109_100 0.1093893836 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
4 Hb_000936_030 0.1099466563 - - hypothetical protein RCOM_0615680 [Ricinus communis]
5 Hb_007574_020 0.1146175553 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
6 Hb_003935_090 0.1154962657 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
7 Hb_010705_040 0.1161816338 - - PREDICTED: kinesin-4 [Jatropha curcas]
8 Hb_014497_070 0.1198891021 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
9 Hb_010288_030 0.12050161 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
10 Hb_012753_150 0.1279806867 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
11 Hb_003109_010 0.1308018214 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
12 Hb_004129_060 0.1316680323 - - triacylglycerol lipase, putative [Ricinus communis]
13 Hb_003020_190 0.1318447239 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
14 Hb_000020_040 0.1342642187 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_004079_090 0.1360261117 - - hypothetical protein RCOM_1053120 [Ricinus communis]
16 Hb_033152_060 0.1408532323 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
17 Hb_001862_050 0.1418478379 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
18 Hb_005568_140 0.1430747775 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000028_250 0.1433351089 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
20 Hb_000964_050 0.1437042159 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]

Gene co-expression network

sample Hb_001755_040 Hb_001755_040 Hb_002232_310 Hb_002232_310 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_000936_030 Hb_000936_030 Hb_001755_040--Hb_000936_030 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_003935_090 Hb_003935_090 Hb_001755_040--Hb_003935_090 Hb_010705_040 Hb_010705_040 Hb_001755_040--Hb_010705_040 Hb_002232_310--Hb_003935_090 Hb_002232_310--Hb_010705_040 Hb_003109_010 Hb_003109_010 Hb_002232_310--Hb_003109_010 Hb_002232_310--Hb_004109_100 Hb_002232_310--Hb_007574_020 Hb_005568_140 Hb_005568_140 Hb_004109_100--Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_004109_100--Hb_002918_220 Hb_002243_030 Hb_002243_030 Hb_004109_100--Hb_002243_030 Hb_003777_260 Hb_003777_260 Hb_004109_100--Hb_003777_260 Hb_002170_060 Hb_002170_060 Hb_004109_100--Hb_002170_060 Hb_015299_040 Hb_015299_040 Hb_004109_100--Hb_015299_040 Hb_004129_060 Hb_004129_060 Hb_000936_030--Hb_004129_060 Hb_000936_030--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000936_030--Hb_002205_180 Hb_000936_030--Hb_002232_310 Hb_004102_090 Hb_004102_090 Hb_000936_030--Hb_004102_090 Hb_007574_020--Hb_003935_090 Hb_007574_020--Hb_004109_100 Hb_007574_020--Hb_005568_140 Hb_007574_020--Hb_002243_030 Hb_003935_090--Hb_004109_100 Hb_012055_080 Hb_012055_080 Hb_003935_090--Hb_012055_080 Hb_023344_100 Hb_023344_100 Hb_003935_090--Hb_023344_100 Hb_000364_140 Hb_000364_140 Hb_010705_040--Hb_000364_140 Hb_000441_210 Hb_000441_210 Hb_010705_040--Hb_000441_210 Hb_004963_020 Hb_004963_020 Hb_010705_040--Hb_004963_020 Hb_010705_040--Hb_004102_090 Hb_010705_040--Hb_002205_180 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.747369 1.27227 22.5806 9.11847 0.197794 0.307297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.279559 0.244375 0.137764 0.477938 2.91466

CAGE analysis