Hb_001758_100

Information

Type -
Description -
Location Contig1758: 142570-148628
Sequence    

Annotation

kegg
ID rcu:RCOM_0306990
description basic helix-loop-helix-containing protein, putative
nr
ID XP_002533696.1
description basic helix-loop-helix-containing protein, putative [Ricinus communis]
swissprot
ID Q9XIN0
description Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1
trembl
ID B9T627
description Basic helix-loop-helix-containing protein, putative OS=Ricinus communis GN=RCOM_0306990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16837: 142209-142731 , PASA_asmbl_16838: 142171-142707 , PASA_asmbl_16840: 145998-146920 , PASA_asmbl_16841: 146506-148003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001758_100 0.0 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
2 Hb_000120_470 0.051438177 - - hypothetical protein VITISV_017372 [Vitis vinifera]
3 Hb_000504_140 0.0565660044 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
4 Hb_008900_010 0.0566427536 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
5 Hb_000465_460 0.0638377535 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
6 Hb_000317_240 0.0653485501 - - PREDICTED: protein DYAD [Jatropha curcas]
7 Hb_000757_060 0.0682182858 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
8 Hb_003125_200 0.069633247 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
9 Hb_007416_320 0.0700903333 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003092_040 0.0702424147 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
11 Hb_000032_270 0.0702640857 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
12 Hb_005779_060 0.0703311518 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
13 Hb_058999_020 0.0719996598 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
14 Hb_000016_250 0.0723151318 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
15 Hb_005618_170 0.072471098 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
16 Hb_005054_350 0.0729908708 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
17 Hb_000030_300 0.0734948373 - - Thioredoxin, putative [Ricinus communis]
18 Hb_005539_280 0.0746452554 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
19 Hb_003615_010 0.0749802714 - - 60S ribosomal protein L8, putative [Ricinus communis]
20 Hb_003126_050 0.077613535 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001758_100 Hb_001758_100 Hb_000120_470 Hb_000120_470 Hb_001758_100--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_001758_100--Hb_000504_140 Hb_008900_010 Hb_008900_010 Hb_001758_100--Hb_008900_010 Hb_000465_460 Hb_000465_460 Hb_001758_100--Hb_000465_460 Hb_000317_240 Hb_000317_240 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_000120_470--Hb_008900_010 Hb_007416_320 Hb_007416_320 Hb_000120_470--Hb_007416_320 Hb_005054_350 Hb_005054_350 Hb_000120_470--Hb_005054_350 Hb_058999_020 Hb_058999_020 Hb_000120_470--Hb_058999_020 Hb_000058_060 Hb_000058_060 Hb_000120_470--Hb_000058_060 Hb_005539_280 Hb_005539_280 Hb_000504_140--Hb_005539_280 Hb_005779_060 Hb_005779_060 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_000504_140--Hb_000317_240 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170 Hb_008900_010--Hb_000504_140 Hb_002284_240 Hb_002284_240 Hb_008900_010--Hb_002284_240 Hb_000146_070 Hb_000146_070 Hb_008900_010--Hb_000146_070 Hb_003918_010 Hb_003918_010 Hb_008900_010--Hb_003918_010 Hb_000465_460--Hb_058999_020 Hb_000465_460--Hb_000317_240 Hb_004931_070 Hb_004931_070 Hb_000465_460--Hb_004931_070 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000317_240--Hb_058999_020 Hb_000757_060--Hb_058999_020 Hb_000757_060--Hb_001242_060 Hb_000538_270 Hb_000538_270 Hb_000757_060--Hb_000538_270 Hb_002499_040 Hb_002499_040 Hb_000757_060--Hb_002499_040 Hb_001248_060 Hb_001248_060 Hb_000757_060--Hb_001248_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16258 8.02124 6.78251 6.23842 9.18029 11.0102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3478 14.9875 12.062 9.75553 3.8167

CAGE analysis