Hb_001758_120

Information

Type -
Description -
Location Contig1758: 156768-158657
Sequence    

Annotation

kegg
ID vvi:100252918
description tropinone reductase homolog
nr
ID CBI30506.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P50165
description Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1
trembl
ID D7THJ0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00920 PE=3 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16846: 156853-158638 , PASA_asmbl_16847: 156853-158637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001758_120 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006637_040 0.0872187937 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
3 Hb_003893_100 0.1013544488 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
4 Hb_000797_030 0.1018306571 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
5 Hb_002749_070 0.1112565021 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
6 Hb_003097_200 0.1116234527 - - conserved hypothetical protein [Ricinus communis]
7 Hb_164283_010 0.1123938407 - - hypothetical protein RCOM_0725500 [Ricinus communis]
8 Hb_000934_170 0.1131451947 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_018591_010 0.1133613586 - - kinase, putative [Ricinus communis]
10 Hb_004544_070 0.1168226719 - - unnamed protein product [Vitis vinifera]
11 Hb_005144_180 0.1193090238 - - PREDICTED: protein enabled homolog [Populus euphratica]
12 Hb_012368_080 0.119442468 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
13 Hb_000911_050 0.1196403879 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
14 Hb_036069_020 0.1203169284 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
15 Hb_008418_010 0.1293840219 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
16 Hb_000032_560 0.1321453284 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
17 Hb_004316_130 0.1344965237 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
18 Hb_002475_070 0.1345704149 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
19 Hb_118707_020 0.1350980876 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000297_180 0.1366740906 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001758_120 Hb_001758_120 Hb_006637_040 Hb_006637_040 Hb_001758_120--Hb_006637_040 Hb_003893_100 Hb_003893_100 Hb_001758_120--Hb_003893_100 Hb_000797_030 Hb_000797_030 Hb_001758_120--Hb_000797_030 Hb_002749_070 Hb_002749_070 Hb_001758_120--Hb_002749_070 Hb_003097_200 Hb_003097_200 Hb_001758_120--Hb_003097_200 Hb_164283_010 Hb_164283_010 Hb_001758_120--Hb_164283_010 Hb_006637_040--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_006637_040--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_006637_040--Hb_008418_010 Hb_006637_040--Hb_000797_030 Hb_012368_080 Hb_012368_080 Hb_006637_040--Hb_012368_080 Hb_003893_100--Hb_000797_030 Hb_003893_100--Hb_003097_200 Hb_004316_130 Hb_004316_130 Hb_003893_100--Hb_004316_130 Hb_003893_100--Hb_012368_080 Hb_000297_180 Hb_000297_180 Hb_003893_100--Hb_000297_180 Hb_003893_100--Hb_006637_040 Hb_000797_030--Hb_003097_200 Hb_000911_050 Hb_000911_050 Hb_000797_030--Hb_000911_050 Hb_000797_030--Hb_004316_130 Hb_004544_070 Hb_004544_070 Hb_002749_070--Hb_004544_070 Hb_002749_070--Hb_164283_010 Hb_011145_020 Hb_011145_020 Hb_002749_070--Hb_011145_020 Hb_000025_740 Hb_000025_740 Hb_002749_070--Hb_000025_740 Hb_002749_070--Hb_018591_010 Hb_000438_190 Hb_000438_190 Hb_002749_070--Hb_000438_190 Hb_003097_200--Hb_000911_050 Hb_003097_200--Hb_006637_040 Hb_003097_200--Hb_004316_130 Hb_164283_010--Hb_018591_010 Hb_164283_010--Hb_008418_010 Hb_164283_010--Hb_004544_070 Hb_164283_010--Hb_011145_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110191 0.368092 0.502508 2.23038 0.0232572 0.0408588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.55114 0.511411

CAGE analysis