Hb_001761_130

Information

Type -
Description -
Location Contig1761: 150701-159595
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00320g
description hypothetical protein
nr
ID XP_012087284.1
description PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067JQB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22563 PE=4 SV=1
Gene Ontology
ID GO:0005829
description evolutionarily conserved c-terminal region 5 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16890: 150727-159521 , PASA_asmbl_16891: 150727-155674 , PASA_asmbl_16892: 150727-159521 , PASA_asmbl_16895: 156848-157202 , PASA_asmbl_16896: 157904-158327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001761_130 0.0 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
2 Hb_172632_110 0.0559277138 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
3 Hb_006831_040 0.0608539516 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
4 Hb_017358_040 0.0660455673 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
5 Hb_002477_090 0.0718572744 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
6 Hb_001232_010 0.0759535725 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
7 Hb_010174_110 0.0771679581 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
8 Hb_000230_260 0.0818218593 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
9 Hb_000069_120 0.084214008 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
10 Hb_001269_140 0.0851847935 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
11 Hb_071130_010 0.0855267322 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
12 Hb_000703_150 0.0857919176 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
13 Hb_000890_210 0.0859159657 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
14 Hb_002391_210 0.0863189385 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
15 Hb_001157_090 0.0867805311 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
16 Hb_001178_070 0.088267203 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
17 Hb_003060_060 0.089119075 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
18 Hb_000140_480 0.0893496673 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
19 Hb_000613_050 0.0899946935 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
20 Hb_000684_290 0.0906588255 - - ubiquitin protein ligase E3a, putative [Ricinus communis]

Gene co-expression network

sample Hb_001761_130 Hb_001761_130 Hb_172632_110 Hb_172632_110 Hb_001761_130--Hb_172632_110 Hb_006831_040 Hb_006831_040 Hb_001761_130--Hb_006831_040 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_002477_090 Hb_002477_090 Hb_001761_130--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_010174_110 Hb_010174_110 Hb_001761_130--Hb_010174_110 Hb_172632_110--Hb_006831_040 Hb_172632_110--Hb_010174_110 Hb_001021_080 Hb_001021_080 Hb_172632_110--Hb_001021_080 Hb_002391_210 Hb_002391_210 Hb_172632_110--Hb_002391_210 Hb_000002_010 Hb_000002_010 Hb_172632_110--Hb_000002_010 Hb_006831_040--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_006831_040--Hb_002740_110 Hb_004994_220 Hb_004994_220 Hb_006831_040--Hb_004994_220 Hb_004117_310 Hb_004117_310 Hb_006831_040--Hb_004117_310 Hb_000069_120 Hb_000069_120 Hb_017358_040--Hb_000069_120 Hb_071130_010 Hb_071130_010 Hb_017358_040--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_017358_040--Hb_000230_260 Hb_000723_220 Hb_000723_220 Hb_017358_040--Hb_000723_220 Hb_003060_060 Hb_003060_060 Hb_017358_040--Hb_003060_060 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_002217_030 Hb_002217_030 Hb_001232_010--Hb_002217_030 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110 Hb_010174_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_010174_110--Hb_003253_040 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_004143_130 Hb_004143_130 Hb_010174_110--Hb_004143_130 Hb_010174_110--Hb_004994_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7168 34.5045 13.5459 28.1068 31.5838 37.2112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4905 21.1958 31.4416 58.6131 21.8246

CAGE analysis