Hb_001761_160

Information

Type -
Description -
Location Contig1761: 169997-174094
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID CAN77149.1
description hypothetical protein VITISV_019364 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BQ76
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019364 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001761_160 0.0 - - hypothetical protein VITISV_019364 [Vitis vinifera]
2 Hb_003414_020 0.0556555463 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
3 Hb_184798_060 0.0903636319 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002553_030 0.1204953277 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
5 Hb_000208_220 0.12421102 - - -
6 Hb_004924_040 0.1349254788 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
7 Hb_003058_160 0.1352065471 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000224_250 0.1372931408 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
9 Hb_141990_030 0.1386909896 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
10 Hb_073467_010 0.1397164073 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
11 Hb_005736_080 0.1420480918 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_002876_010 0.1446475966 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_001105_140 0.1484838988 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
14 Hb_001300_090 0.1513208983 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
15 Hb_000108_030 0.1633522573 - - -
16 Hb_002260_210 0.1633524515 - - unnamed protein product [Vitis vinifera]
17 Hb_000710_110 0.1635164974 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
18 Hb_006221_020 0.1638537451 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
19 Hb_000311_130 0.1665735745 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
20 Hb_010023_020 0.1667356594 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001761_160 Hb_001761_160 Hb_003414_020 Hb_003414_020 Hb_001761_160--Hb_003414_020 Hb_184798_060 Hb_184798_060 Hb_001761_160--Hb_184798_060 Hb_002553_030 Hb_002553_030 Hb_001761_160--Hb_002553_030 Hb_000208_220 Hb_000208_220 Hb_001761_160--Hb_000208_220 Hb_004924_040 Hb_004924_040 Hb_001761_160--Hb_004924_040 Hb_003058_160 Hb_003058_160 Hb_001761_160--Hb_003058_160 Hb_003414_020--Hb_002553_030 Hb_000108_030 Hb_000108_030 Hb_003414_020--Hb_000108_030 Hb_002260_210 Hb_002260_210 Hb_003414_020--Hb_002260_210 Hb_000710_110 Hb_000710_110 Hb_003414_020--Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_003414_020--Hb_006221_020 Hb_184798_060--Hb_000208_220 Hb_001081_050 Hb_001081_050 Hb_184798_060--Hb_001081_050 Hb_184798_060--Hb_002553_030 Hb_184798_060--Hb_003414_020 Hb_003144_010 Hb_003144_010 Hb_184798_060--Hb_003144_010 Hb_002553_030--Hb_000208_220 Hb_001508_010 Hb_001508_010 Hb_002553_030--Hb_001508_010 Hb_000373_140 Hb_000373_140 Hb_002553_030--Hb_000373_140 Hb_001300_090 Hb_001300_090 Hb_000208_220--Hb_001300_090 Hb_161881_010 Hb_161881_010 Hb_000208_220--Hb_161881_010 Hb_000208_220--Hb_001081_050 Hb_004924_040--Hb_003058_160 Hb_073467_010 Hb_073467_010 Hb_004924_040--Hb_073467_010 Hb_141990_030 Hb_141990_030 Hb_004924_040--Hb_141990_030 Hb_005736_080 Hb_005736_080 Hb_004924_040--Hb_005736_080 Hb_001105_140 Hb_001105_140 Hb_004924_040--Hb_001105_140 Hb_000103_380 Hb_000103_380 Hb_004924_040--Hb_000103_380 Hb_003058_160--Hb_073467_010 Hb_003058_160--Hb_141990_030 Hb_003058_160--Hb_005736_080 Hb_003058_160--Hb_001105_140 Hb_003058_160--Hb_000103_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0127688 0.00477888 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0737389

CAGE analysis