Hb_001762_060

Information

Type -
Description -
Location Contig1762: 49268-66898
Sequence    

Annotation

kegg
ID rcu:RCOM_1566320
description pantothenate kinase, putative
nr
ID XP_002514412.1
description pantothenate kinase, putative [Ricinus communis]
swissprot
ID Q949P3
description Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1
trembl
ID B9RKZ3
description Pantothenate kinase, putative OS=Ricinus communis GN=RCOM_1566320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16903: 49286-66850 , PASA_asmbl_16904: 49290-64755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001762_060 0.0 - - pantothenate kinase, putative [Ricinus communis]
2 Hb_001006_180 0.0716699462 - - PREDICTED: endonuclease V-like [Jatropha curcas]
3 Hb_000032_040 0.0897046242 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
4 Hb_000069_100 0.0899844645 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024714_060 0.0907323495 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
6 Hb_012423_050 0.0920289129 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
7 Hb_000398_160 0.0969361935 - - GDP-mannose transporter, putative [Ricinus communis]
8 Hb_002078_460 0.0980288686 - - -
9 Hb_162275_030 0.0984136849 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
10 Hb_006831_030 0.098949559 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
11 Hb_001616_060 0.1004007359 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
12 Hb_003929_120 0.1019259876 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
13 Hb_009265_060 0.1054367447 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_001575_020 0.1061239371 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007382_150 0.1083485878 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
16 Hb_001427_230 0.1083703412 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001863_480 0.1099675478 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
18 Hb_002119_120 0.1109370149 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
19 Hb_000162_140 0.1127710655 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
20 Hb_000329_330 0.1133702107 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001762_060 Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_001762_060--Hb_001006_180 Hb_000032_040 Hb_000032_040 Hb_001762_060--Hb_000032_040 Hb_000069_100 Hb_000069_100 Hb_001762_060--Hb_000069_100 Hb_024714_060 Hb_024714_060 Hb_001762_060--Hb_024714_060 Hb_012423_050 Hb_012423_050 Hb_001762_060--Hb_012423_050 Hb_000398_160 Hb_000398_160 Hb_001762_060--Hb_000398_160 Hb_001006_180--Hb_024714_060 Hb_001006_180--Hb_012423_050 Hb_006831_030 Hb_006831_030 Hb_001006_180--Hb_006831_030 Hb_001006_180--Hb_000398_160 Hb_162275_030 Hb_162275_030 Hb_001006_180--Hb_162275_030 Hb_011004_010 Hb_011004_010 Hb_000032_040--Hb_011004_010 Hb_000032_040--Hb_001006_180 Hb_000742_270 Hb_000742_270 Hb_000032_040--Hb_000742_270 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_024714_060--Hb_006831_030 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_012423_050--Hb_000398_160 Hb_012423_050--Hb_009265_060 Hb_012423_050--Hb_000032_040 Hb_000398_160--Hb_006831_030 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000272_070 Hb_000272_070 Hb_000398_160--Hb_000272_070 Hb_000398_160--Hb_000069_100 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.4711 6.46201 17.2767 27.3091 36.7639 66.3326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.344 137.395 192.72 37.3706 22.058

CAGE analysis