Hb_001766_020

Information

Type -
Description -
Location Contig1766: 23391-29663
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12650g
description POPTRDRAFT_577718; glycosyl transferase family 8 family protein
nr
ID XP_011035850.1
description PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
swissprot
ID Q0WV13
description Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1
trembl
ID A0A0B0MVJ7
description Hexosyltransferase OS=Gossypium arboreum GN=F383_28597 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 13 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16910: 23061-29605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_020 0.0 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
2 Hb_001104_170 0.0756700837 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
3 Hb_000442_010 0.0798308399 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
4 Hb_003728_040 0.0913584815 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
5 Hb_004440_040 0.0936695883 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000905_210 0.0943159009 - - PREDICTED: protein gar2 [Jatropha curcas]
7 Hb_005389_160 0.0954674653 - - PREDICTED: casein kinase I [Jatropha curcas]
8 Hb_000015_170 0.0958519865 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002263_040 0.0962742476 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_011930_110 0.0986404727 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
11 Hb_010381_030 0.1001466417 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
12 Hb_008695_090 0.1004978368 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
13 Hb_000019_050 0.1013241871 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
14 Hb_000347_120 0.1053700797 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
15 Hb_001754_030 0.1055988201 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
16 Hb_004899_040 0.1069897436 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
17 Hb_000373_100 0.1074227911 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
18 Hb_000291_010 0.1084657426 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
19 Hb_003175_030 0.1087005984 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
20 Hb_003055_140 0.1087798226 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]

Gene co-expression network

sample Hb_001766_020 Hb_001766_020 Hb_001104_170 Hb_001104_170 Hb_001766_020--Hb_001104_170 Hb_000442_010 Hb_000442_010 Hb_001766_020--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_001766_020--Hb_003728_040 Hb_004440_040 Hb_004440_040 Hb_001766_020--Hb_004440_040 Hb_000905_210 Hb_000905_210 Hb_001766_020--Hb_000905_210 Hb_005389_160 Hb_005389_160 Hb_001766_020--Hb_005389_160 Hb_001104_170--Hb_000442_010 Hb_001104_170--Hb_005389_160 Hb_000291_010 Hb_000291_010 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_002798_070 Hb_002798_070 Hb_000442_010--Hb_002798_070 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_003055_140 Hb_003055_140 Hb_003728_040--Hb_003055_140 Hb_003728_040--Hb_000442_010 Hb_003728_040--Hb_004440_040 Hb_003728_040--Hb_001104_170 Hb_000347_120 Hb_000347_120 Hb_003728_040--Hb_000347_120 Hb_011930_110 Hb_011930_110 Hb_004440_040--Hb_011930_110 Hb_004440_040--Hb_000347_120 Hb_004440_040--Hb_002263_040 Hb_002636_100 Hb_002636_100 Hb_004440_040--Hb_002636_100 Hb_003055_060 Hb_003055_060 Hb_004440_040--Hb_003055_060 Hb_003682_030 Hb_003682_030 Hb_000905_210--Hb_003682_030 Hb_004870_050 Hb_004870_050 Hb_000905_210--Hb_004870_050 Hb_000260_180 Hb_000260_180 Hb_000905_210--Hb_000260_180 Hb_000905_210--Hb_002263_040 Hb_008695_090 Hb_008695_090 Hb_000905_210--Hb_008695_090 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_010417_070 Hb_010417_070 Hb_005389_160--Hb_010417_070 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6772 28.2466 13.7333 8.42117 6.94598 7.10467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.24835 10.7884 12.4061 8.14745 7.90784

CAGE analysis