Hb_001766_030

Information

Type -
Description -
Location Contig1766: 31377-35038
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12640g
description POPTRDRAFT_808962; hypothetical protein
nr
ID XP_002324093.1
description hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
swissprot
ID Q8LCS8
description Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1
trembl
ID B9IK46
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12640g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16911: 31350-34793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_030 0.0 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
2 Hb_004162_180 0.1239054341 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000110_170 0.1272360238 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001225_010 0.1285043594 - - unnamed protein product [Coffea canephora]
5 Hb_003540_200 0.1444606632 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_001449_090 0.149674067 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
7 Hb_002105_030 0.1546080581 - - -
8 Hb_001157_080 0.1554965758 - - zinc finger protein, putative [Ricinus communis]
9 Hb_025645_030 0.1577277209 - - -
10 Hb_007254_080 0.1582237074 - - -
11 Hb_004108_110 0.1584872147 - - conserved hypothetical protein [Ricinus communis]
12 Hb_147752_010 0.1589358076 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
13 Hb_003038_190 0.1596214403 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
14 Hb_012053_010 0.1605014777 - - srpk, putative [Ricinus communis]
15 Hb_002243_060 0.1609771958 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
16 Hb_000997_190 0.1620288437 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
17 Hb_000302_290 0.1625572094 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
18 Hb_023344_050 0.1657595905 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
19 Hb_003020_330 0.1667028058 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
20 Hb_001172_100 0.1667855396 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001766_030 Hb_001766_030 Hb_004162_180 Hb_004162_180 Hb_001766_030--Hb_004162_180 Hb_000110_170 Hb_000110_170 Hb_001766_030--Hb_000110_170 Hb_001225_010 Hb_001225_010 Hb_001766_030--Hb_001225_010 Hb_003540_200 Hb_003540_200 Hb_001766_030--Hb_003540_200 Hb_001449_090 Hb_001449_090 Hb_001766_030--Hb_001449_090 Hb_002105_030 Hb_002105_030 Hb_001766_030--Hb_002105_030 Hb_025645_030 Hb_025645_030 Hb_004162_180--Hb_025645_030 Hb_004162_180--Hb_000110_170 Hb_003777_040 Hb_003777_040 Hb_004162_180--Hb_003777_040 Hb_004162_180--Hb_001225_010 Hb_012053_010 Hb_012053_010 Hb_004162_180--Hb_012053_010 Hb_000878_020 Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_000110_170--Hb_001225_010 Hb_001172_100 Hb_001172_100 Hb_001225_010--Hb_001172_100 Hb_001225_010--Hb_003020_330 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001225_010--Hb_001449_090 Hb_001225_010--Hb_000878_020 Hb_003540_200--Hb_003020_330 Hb_003540_200--Hb_001225_010 Hb_000291_270 Hb_000291_270 Hb_003540_200--Hb_000291_270 Hb_003540_200--Hb_012053_010 Hb_154141_030 Hb_154141_030 Hb_003540_200--Hb_154141_030 Hb_001307_210 Hb_001307_210 Hb_001449_090--Hb_001307_210 Hb_002909_130 Hb_002909_130 Hb_001449_090--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_001449_090--Hb_012395_130 Hb_011377_020 Hb_011377_020 Hb_001449_090--Hb_011377_020 Hb_001449_090--Hb_000878_020 Hb_001386_050 Hb_001386_050 Hb_002105_030--Hb_001386_050 Hb_002105_030--Hb_012053_010 Hb_002105_030--Hb_001449_090 Hb_002344_070 Hb_002344_070 Hb_002105_030--Hb_002344_070 Hb_146225_010 Hb_146225_010 Hb_002105_030--Hb_146225_010 Hb_000282_070 Hb_000282_070 Hb_002105_030--Hb_000282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59821 2.06571 2.50071 7.11782 0.394095 1.26427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37861 34.1994 11.1802 4.68181 6.59052

CAGE analysis