Hb_001766_050

Information

Type -
Description -
Location Contig1766: 43178-45795
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12620g
description POPTRDRAFT_908996; hypothetical protein
nr
ID XP_012084788.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
swissprot
ID Q84J46
description Pentatricopeptide repeat-containing protein At3g29290 OS=Arabidopsis thaliana GN=EMB2076 PE=2 SV=1
trembl
ID A0A067JTF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16915: 43243-44220 , PASA_asmbl_16917: 45011-45182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
2 Hb_001541_120 0.0560931496 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
3 Hb_008421_020 0.0752292836 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
4 Hb_000928_070 0.0802440298 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
5 Hb_000130_220 0.0810146778 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
6 Hb_062226_060 0.081904122 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
7 Hb_001662_130 0.0823702194 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
8 Hb_003878_090 0.0833010386 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
9 Hb_158530_020 0.0842671304 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
10 Hb_000768_200 0.0849269619 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
11 Hb_001226_140 0.0878458337 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
12 Hb_002014_030 0.0881488482 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
13 Hb_004951_060 0.0884296625 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
14 Hb_001195_450 0.0891338868 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
15 Hb_001818_100 0.0892731547 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_000811_070 0.0910795973 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
17 Hb_003153_010 0.0918058347 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
18 Hb_015675_040 0.0923619379 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
19 Hb_006132_090 0.0926177793 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
20 Hb_133702_010 0.0926423424 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001766_050 Hb_001766_050 Hb_001541_120 Hb_001541_120 Hb_001766_050--Hb_001541_120 Hb_008421_020 Hb_008421_020 Hb_001766_050--Hb_008421_020 Hb_000928_070 Hb_000928_070 Hb_001766_050--Hb_000928_070 Hb_000130_220 Hb_000130_220 Hb_001766_050--Hb_000130_220 Hb_062226_060 Hb_062226_060 Hb_001766_050--Hb_062226_060 Hb_001662_130 Hb_001662_130 Hb_001766_050--Hb_001662_130 Hb_001541_120--Hb_000928_070 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_008421_020--Hb_000811_070 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_005016_040 Hb_005016_040 Hb_008421_020--Hb_005016_040 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000928_070--Hb_000140_090 Hb_005116_050 Hb_005116_050 Hb_000130_220--Hb_005116_050 Hb_000482_040 Hb_000482_040 Hb_000130_220--Hb_000482_040 Hb_000510_290 Hb_000510_290 Hb_000130_220--Hb_000510_290 Hb_000130_220--Hb_001541_120 Hb_000805_100 Hb_000805_100 Hb_000130_220--Hb_000805_100 Hb_004951_060 Hb_004951_060 Hb_062226_060--Hb_004951_060 Hb_158530_020 Hb_158530_020 Hb_062226_060--Hb_158530_020 Hb_007904_230 Hb_007904_230 Hb_062226_060--Hb_007904_230 Hb_000364_050 Hb_000364_050 Hb_062226_060--Hb_000364_050 Hb_000023_360 Hb_000023_360 Hb_062226_060--Hb_000023_360 Hb_062226_060--Hb_000811_070 Hb_001662_130--Hb_004951_060 Hb_000080_130 Hb_000080_130 Hb_001662_130--Hb_000080_130 Hb_000590_120 Hb_000590_120 Hb_001662_130--Hb_000590_120 Hb_015675_040 Hb_015675_040 Hb_001662_130--Hb_015675_040 Hb_005653_070 Hb_005653_070 Hb_001662_130--Hb_005653_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39681 2.49921 3.61465 3.66392 1.27459 2.24428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.06687 4.06481 3.84011 2.72448 5.59677

CAGE analysis