Hb_001766_060

Information

Type -
Description -
Location Contig1766: 47109-49874
Sequence    

Annotation

kegg
ID rcu:RCOM_0524300
description hypothetical protein
nr
ID XP_002526072.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FLZ8
description EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1
trembl
ID B9SJA3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0524300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16919: 47563-50117 , PASA_asmbl_16920: 47563-50112 , PASA_asmbl_16921: 47198-50117 , PASA_asmbl_16922: 49078-49262 , PASA_asmbl_16923: 49446-49581 , PASA_asmbl_16924: 47198-48767 , PASA_asmbl_16925: 47198-48774 , PASA_asmbl_16926: 50613-59585 , PASA_asmbl_16927: 50723-59508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001245_100 0.0459360646 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
3 Hb_003151_040 0.0478600409 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
4 Hb_005846_040 0.0639048715 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
5 Hb_001246_110 0.0689954879 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
6 Hb_027380_050 0.0716562365 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
7 Hb_012019_010 0.0716748556 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
8 Hb_000001_060 0.0722512171 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
9 Hb_002046_180 0.0726040926 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
10 Hb_000221_190 0.0764564401 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
11 Hb_000373_070 0.0778210859 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
12 Hb_001030_020 0.0779767073 - - Poly(A) polymerase alpha, putative [Ricinus communis]
13 Hb_000729_030 0.0783779843 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
14 Hb_004143_150 0.0786752832 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
15 Hb_000336_150 0.0798515061 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
16 Hb_000152_500 0.0823597745 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
17 Hb_003502_060 0.0835838765 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
18 Hb_000667_070 0.0843603662 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_000703_350 0.0844557423 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
20 Hb_000869_080 0.0851005598 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001766_060 Hb_001766_060 Hb_001245_100 Hb_001245_100 Hb_001766_060--Hb_001245_100 Hb_003151_040 Hb_003151_040 Hb_001766_060--Hb_003151_040 Hb_005846_040 Hb_005846_040 Hb_001766_060--Hb_005846_040 Hb_001246_110 Hb_001246_110 Hb_001766_060--Hb_001246_110 Hb_027380_050 Hb_027380_050 Hb_001766_060--Hb_027380_050 Hb_012019_010 Hb_012019_010 Hb_001766_060--Hb_012019_010 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_001245_100--Hb_005846_040 Hb_001245_100--Hb_027380_050 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_003151_040--Hb_005846_040 Hb_000373_070 Hb_000373_070 Hb_003151_040--Hb_000373_070 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_000152_500 Hb_000152_500 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_000164_020 Hb_000164_020 Hb_001246_110--Hb_000164_020 Hb_000729_030 Hb_000729_030 Hb_001246_110--Hb_000729_030 Hb_000869_080 Hb_000869_080 Hb_001246_110--Hb_000869_080 Hb_001246_110--Hb_012019_010 Hb_000342_060 Hb_000342_060 Hb_001246_110--Hb_000342_060 Hb_058999_020 Hb_058999_020 Hb_027380_050--Hb_058999_020 Hb_005779_060 Hb_005779_060 Hb_027380_050--Hb_005779_060 Hb_000684_470 Hb_000684_470 Hb_027380_050--Hb_000684_470 Hb_027380_050--Hb_000152_500 Hb_001030_020 Hb_001030_020 Hb_027380_050--Hb_001030_020 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_012019_010--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4351 34.7163 26.4344 28.9012 17.5756 27.4982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.189 61.1994 42.3058 23.6858 25.4939

CAGE analysis