Hb_001766_070

Information

Type -
Description -
Location Contig1766: 50642-59566
Sequence    

Annotation

kegg
ID rcu:RCOM_0524280
description hypothetical protein
nr
ID XP_002526070.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJA1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0524280 PE=4 SV=1
Gene Ontology
ID GO:0008152
description protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16926: 50613-59585 , PASA_asmbl_16927: 50723-59508 , PASA_asmbl_16928: 51799-51982 , PASA_asmbl_16929: 51983-52124 , PASA_asmbl_16932: 60484-62072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000673_010 0.0649987321 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
3 Hb_000787_080 0.0796005017 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
4 Hb_000137_010 0.0828284194 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
5 Hb_000270_600 0.0887692167 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
6 Hb_001409_060 0.0908273952 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
7 Hb_008120_040 0.0960614681 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
8 Hb_000452_030 0.0984142207 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
9 Hb_003687_130 0.0985262014 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
10 Hb_000815_310 0.0989484845 - - protein kinase, putative [Ricinus communis]
11 Hb_000003_680 0.0995963713 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
12 Hb_000086_270 0.0997476725 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
13 Hb_033152_090 0.0999839068 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
14 Hb_006846_170 0.1004441835 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
15 Hb_000979_140 0.1010625146 - - kinase family protein [Populus trichocarpa]
16 Hb_102948_010 0.101120619 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_000788_030 0.1012703461 - - PREDICTED: dynamin-2A [Jatropha curcas]
18 Hb_003408_060 0.1030854347 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
19 Hb_000680_120 0.1031421938 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
20 Hb_005235_070 0.1036536317 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001766_070 Hb_001766_070 Hb_000673_010 Hb_000673_010 Hb_001766_070--Hb_000673_010 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_000137_010 Hb_000137_010 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_001409_060 Hb_001409_060 Hb_001766_070--Hb_001409_060 Hb_008120_040 Hb_008120_040 Hb_001766_070--Hb_008120_040 Hb_000673_010--Hb_008120_040 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_000673_010--Hb_001409_060 Hb_000003_680 Hb_000003_680 Hb_000787_080--Hb_000003_680 Hb_000258_420 Hb_000258_420 Hb_000787_080--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_000787_080--Hb_000815_310 Hb_033152_090 Hb_033152_090 Hb_000787_080--Hb_033152_090 Hb_000787_080--Hb_000137_010 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000230_460 Hb_000230_460 Hb_000137_010--Hb_000230_460 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090 Hb_000270_600--Hb_000673_010 Hb_000011_240 Hb_000011_240 Hb_000270_600--Hb_000011_240 Hb_000445_210 Hb_000445_210 Hb_000270_600--Hb_000445_210 Hb_000270_600--Hb_001409_060 Hb_001430_020 Hb_001430_020 Hb_000270_600--Hb_001430_020 Hb_102948_010 Hb_102948_010 Hb_001409_060--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_001409_060--Hb_002218_020 Hb_000663_080 Hb_000663_080 Hb_001409_060--Hb_000663_080 Hb_001409_060--Hb_001430_020 Hb_015807_080 Hb_015807_080 Hb_008120_040--Hb_015807_080 Hb_000260_160 Hb_000260_160 Hb_008120_040--Hb_000260_160 Hb_000979_140 Hb_000979_140 Hb_008120_040--Hb_000979_140 Hb_000506_110 Hb_000506_110 Hb_008120_040--Hb_000506_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66255 9.63504 12.7568 7.16759 2.29074 2.22284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59454 3.12631 3.44063 2.76564 9.54943

CAGE analysis