Hb_001766_080

Information

Type -
Description -
Location Contig1766: 61198-62230
Sequence    

Annotation

kegg
ID rcu:RCOM_0524270
description ubiquitin-protein ligase, putative
nr
ID XP_012084779.1
description PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19905 PE=4 SV=1
Gene Ontology
ID GO:0008270
description PREDICTED: uncharacterized protein LOC105644125

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16932: 60484-62072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_080 0.0 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
2 Hb_005051_020 0.0775803406 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
3 Hb_003617_020 0.0860165193 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
4 Hb_004672_040 0.0880970926 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
5 Hb_000072_120 0.0891486871 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_005269_040 0.0934845615 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
7 Hb_000009_560 0.0950095804 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
8 Hb_000192_080 0.0960415251 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
9 Hb_001377_270 0.0973995844 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
10 Hb_050454_010 0.0975716734 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
11 Hb_001936_010 0.0987731425 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
12 Hb_044736_010 0.0988730241 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_001377_490 0.0994489987 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
14 Hb_001473_160 0.1000699158 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_001357_040 0.103157715 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
16 Hb_003544_110 0.1044563632 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
17 Hb_001799_180 0.1050198755 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_001163_100 0.1051231872 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_001674_030 0.1060737535 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
20 Hb_000080_150 0.106528027 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001766_080 Hb_001766_080 Hb_005051_020 Hb_005051_020 Hb_001766_080--Hb_005051_020 Hb_003617_020 Hb_003617_020 Hb_001766_080--Hb_003617_020 Hb_004672_040 Hb_004672_040 Hb_001766_080--Hb_004672_040 Hb_000072_120 Hb_000072_120 Hb_001766_080--Hb_000072_120 Hb_005269_040 Hb_005269_040 Hb_001766_080--Hb_005269_040 Hb_000009_560 Hb_000009_560 Hb_001766_080--Hb_000009_560 Hb_001473_160 Hb_001473_160 Hb_005051_020--Hb_001473_160 Hb_000406_140 Hb_000406_140 Hb_005051_020--Hb_000406_140 Hb_005051_020--Hb_000072_120 Hb_005051_020--Hb_003617_020 Hb_002754_010 Hb_002754_010 Hb_005051_020--Hb_002754_010 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_003617_020--Hb_000072_120 Hb_001163_100 Hb_001163_100 Hb_004672_040--Hb_001163_100 Hb_000050_190 Hb_000050_190 Hb_004672_040--Hb_000050_190 Hb_003168_110 Hb_003168_110 Hb_004672_040--Hb_003168_110 Hb_000207_330 Hb_000207_330 Hb_004672_040--Hb_000207_330 Hb_000192_080 Hb_000192_080 Hb_004672_040--Hb_000192_080 Hb_006915_030 Hb_006915_030 Hb_004672_040--Hb_006915_030 Hb_000072_120--Hb_001473_160 Hb_000072_120--Hb_000329_230 Hb_003906_200 Hb_003906_200 Hb_000072_120--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000072_120--Hb_001674_030 Hb_004030_080 Hb_004030_080 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050 Hb_144528_010 Hb_144528_010 Hb_005269_040--Hb_144528_010 Hb_001377_270 Hb_001377_270 Hb_005269_040--Hb_001377_270 Hb_001538_130 Hb_001538_130 Hb_005269_040--Hb_001538_130 Hb_002662_020 Hb_002662_020 Hb_005269_040--Hb_002662_020 Hb_005269_040--Hb_000192_080 Hb_074715_010 Hb_074715_010 Hb_005269_040--Hb_074715_010 Hb_000009_560--Hb_000192_080 Hb_001377_490 Hb_001377_490 Hb_000009_560--Hb_001377_490 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_000009_560--Hb_001538_130 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.28126 11.1462 6.08913 17.1156 7.14511 13.3053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.04608 7.96632 16.9653 7.01249 6.37346

CAGE analysis