Hb_001766_090

Information

Type -
Description -
Location Contig1766: 83237-92994
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04330g
description Germin-like protein subfamily 1 member 6 precursor
nr
ID KDP23769.1
description hypothetical protein JCGZ_23602 [Jatropha curcas]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID A0A067JW67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23602 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_090 0.0 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
2 Hb_030593_010 0.0286424956 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
3 Hb_034558_010 0.0393131059 - - -
4 Hb_023827_010 0.0451822578 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
5 Hb_007658_030 0.0462775902 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
6 Hb_128894_010 0.046520349 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000484_050 0.05091053 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
8 Hb_106595_010 0.0568708758 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
9 Hb_009740_010 0.0570980041 - - receptor-kinase, putative [Ricinus communis]
10 Hb_011909_130 0.0644076346 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
11 Hb_044724_020 0.0661511718 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
12 Hb_007264_050 0.0707147712 - - -
13 Hb_000215_380 0.0754261302 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
14 Hb_007328_020 0.0765875419 - - -
15 Hb_000563_370 0.0772686555 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
16 Hb_030312_060 0.0773430745 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
17 Hb_000016_290 0.0914669659 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_000871_020 0.092256963 - - receptor-kinase, putative [Ricinus communis]
19 Hb_011639_130 0.096233786 - - mads box protein, putative [Ricinus communis]
20 Hb_004829_050 0.0975027515 - - hypothetical protein TRIUR3_09654 [Triticum urartu]

Gene co-expression network

sample Hb_001766_090 Hb_001766_090 Hb_030593_010 Hb_030593_010 Hb_001766_090--Hb_030593_010 Hb_034558_010 Hb_034558_010 Hb_001766_090--Hb_034558_010 Hb_023827_010 Hb_023827_010 Hb_001766_090--Hb_023827_010 Hb_007658_030 Hb_007658_030 Hb_001766_090--Hb_007658_030 Hb_128894_010 Hb_128894_010 Hb_001766_090--Hb_128894_010 Hb_000484_050 Hb_000484_050 Hb_001766_090--Hb_000484_050 Hb_030593_010--Hb_023827_010 Hb_030593_010--Hb_007658_030 Hb_030593_010--Hb_000484_050 Hb_011909_130 Hb_011909_130 Hb_030593_010--Hb_011909_130 Hb_009740_010 Hb_009740_010 Hb_030593_010--Hb_009740_010 Hb_034558_010--Hb_128894_010 Hb_106595_010 Hb_106595_010 Hb_034558_010--Hb_106595_010 Hb_034558_010--Hb_007658_030 Hb_044724_020 Hb_044724_020 Hb_034558_010--Hb_044724_020 Hb_034558_010--Hb_000484_050 Hb_023827_010--Hb_009740_010 Hb_023827_010--Hb_007658_030 Hb_023827_010--Hb_000484_050 Hb_023827_010--Hb_011909_130 Hb_007658_030--Hb_000484_050 Hb_007658_030--Hb_011909_130 Hb_007658_030--Hb_128894_010 Hb_128894_010--Hb_106595_010 Hb_128894_010--Hb_044724_020 Hb_000215_380 Hb_000215_380 Hb_128894_010--Hb_000215_380 Hb_007328_020 Hb_007328_020 Hb_128894_010--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_128894_010--Hb_000563_370 Hb_000484_050--Hb_011909_130 Hb_011639_130 Hb_011639_130 Hb_000484_050--Hb_011639_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0539691 94.5305 0 0.229617 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.97973 0

CAGE analysis