Hb_001766_110

Information

Type -
Description -
Location Contig1766: 97670-107522
Sequence    

Annotation

kegg
ID rcu:RCOM_0611050
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_012089398.1
description PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
swissprot
ID Q9M8Y0
description Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1
trembl
ID A0A067JIS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23590 PE=4 SV=1
Gene Ontology
ID GO:0016757
description probable udp-n-acetylglucosamine--peptide n-acetylglucosaminyltransferase sec

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16936: 99595-100833 , PASA_asmbl_16937: 101042-103628 , PASA_asmbl_16938: 107396-107512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_110 0.0 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
2 Hb_001481_090 0.063413949 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
3 Hb_000656_400 0.0667324706 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
4 Hb_003126_080 0.074091549 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
5 Hb_000251_130 0.0751245483 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
6 Hb_003952_090 0.0758102027 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
7 Hb_000085_050 0.0767526855 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_015279_010 0.0780444096 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_001159_140 0.0781608442 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
10 Hb_027380_050 0.0787751559 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
11 Hb_000041_270 0.0793695858 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
12 Hb_000210_180 0.0821417926 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_001828_060 0.0826619008 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
14 Hb_005618_170 0.0828902725 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
15 Hb_058999_020 0.0839841724 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
16 Hb_008221_140 0.0849933597 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
17 Hb_004116_190 0.0853927022 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
18 Hb_000217_030 0.0859825331 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
19 Hb_027472_040 0.0866960089 - - SKP1 [Hevea brasiliensis]
20 Hb_005357_030 0.0877910727 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001766_110 Hb_001766_110 Hb_001481_090 Hb_001481_090 Hb_001766_110--Hb_001481_090 Hb_000656_400 Hb_000656_400 Hb_001766_110--Hb_000656_400 Hb_003126_080 Hb_003126_080 Hb_001766_110--Hb_003126_080 Hb_000251_130 Hb_000251_130 Hb_001766_110--Hb_000251_130 Hb_003952_090 Hb_003952_090 Hb_001766_110--Hb_003952_090 Hb_000085_050 Hb_000085_050 Hb_001766_110--Hb_000085_050 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_001481_090--Hb_003952_090 Hb_001481_090--Hb_003126_080 Hb_001481_090--Hb_000656_400 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280 Hb_000251_130--Hb_001226_160 Hb_000251_130--Hb_000656_400 Hb_002183_090 Hb_002183_090 Hb_000251_130--Hb_002183_090 Hb_005357_030 Hb_005357_030 Hb_000251_130--Hb_005357_030 Hb_000251_130--Hb_172632_090 Hb_019253_020 Hb_019253_020 Hb_000251_130--Hb_019253_020 Hb_002477_280 Hb_002477_280 Hb_003952_090--Hb_002477_280 Hb_001369_220 Hb_001369_220 Hb_003952_090--Hb_001369_220 Hb_002759_150 Hb_002759_150 Hb_003952_090--Hb_002759_150 Hb_018838_030 Hb_018838_030 Hb_003952_090--Hb_018838_030 Hb_000085_050--Hb_002183_090 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000976_170 Hb_000976_170 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1548 12.509 7.31091 9.31928 13.7713 14.3487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5375 30.7806 14.9645 15.562 8.42081

CAGE analysis