Hb_001766_130

Information

Type -
Description -
Location Contig1766: 112375-118658
Sequence    

Annotation

kegg
ID rcu:RCOM_0610850
description zinc finger protein, putative
nr
ID XP_002522021.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LB81
description GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1
trembl
ID B9S7Q2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0610850 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g33370-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_130 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_096027_010 0.0755421348 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_005762_010 0.0760361604 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
4 Hb_003339_010 0.0767504119 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
5 Hb_185726_010 0.0800652166 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_012670_090 0.0832509339 - - GDSL-motif lipase/hydrolase family protein [Populus trichocarpa]
7 Hb_000230_300 0.0886765787 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
8 Hb_008054_030 0.090354646 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
9 Hb_011853_020 0.0931248839 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
10 Hb_000193_180 0.0940952549 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
11 Hb_006651_030 0.0948772898 - - unnamed protein product [Homo sapiens]
12 Hb_011909_050 0.0986850839 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
13 Hb_029977_030 0.0988205088 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
14 Hb_003893_130 0.1050200675 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_000710_030 0.1073698454 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
16 Hb_000684_070 0.1109046466 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
17 Hb_009620_110 0.1142419927 - - -
18 Hb_000718_060 0.1176997769 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
19 Hb_010164_030 0.1182197927 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
20 Hb_008221_200 0.1183678148 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]

Gene co-expression network

sample Hb_001766_130 Hb_001766_130 Hb_096027_010 Hb_096027_010 Hb_001766_130--Hb_096027_010 Hb_005762_010 Hb_005762_010 Hb_001766_130--Hb_005762_010 Hb_003339_010 Hb_003339_010 Hb_001766_130--Hb_003339_010 Hb_185726_010 Hb_185726_010 Hb_001766_130--Hb_185726_010 Hb_012670_090 Hb_012670_090 Hb_001766_130--Hb_012670_090 Hb_000230_300 Hb_000230_300 Hb_001766_130--Hb_000230_300 Hb_011853_020 Hb_011853_020 Hb_096027_010--Hb_011853_020 Hb_029977_030 Hb_029977_030 Hb_096027_010--Hb_029977_030 Hb_011618_110 Hb_011618_110 Hb_096027_010--Hb_011618_110 Hb_002636_120 Hb_002636_120 Hb_096027_010--Hb_002636_120 Hb_096027_010--Hb_000230_300 Hb_005762_010--Hb_003339_010 Hb_005762_010--Hb_000230_300 Hb_008054_030 Hb_008054_030 Hb_005762_010--Hb_008054_030 Hb_000103_200 Hb_000103_200 Hb_005762_010--Hb_000103_200 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_004137_040 Hb_004137_040 Hb_005762_010--Hb_004137_040 Hb_003339_010--Hb_008054_030 Hb_000028_190 Hb_000028_190 Hb_003339_010--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_003339_010--Hb_007163_100 Hb_002150_090 Hb_002150_090 Hb_003339_010--Hb_002150_090 Hb_003339_010--Hb_004137_040 Hb_009620_110 Hb_009620_110 Hb_185726_010--Hb_009620_110 Hb_000749_300 Hb_000749_300 Hb_185726_010--Hb_000749_300 Hb_009522_010 Hb_009522_010 Hb_185726_010--Hb_009522_010 Hb_000462_010 Hb_000462_010 Hb_185726_010--Hb_000462_010 Hb_001902_040 Hb_001902_040 Hb_185726_010--Hb_001902_040 Hb_012670_090--Hb_003339_010 Hb_012670_090--Hb_000230_300 Hb_012670_090--Hb_005762_010 Hb_000684_070 Hb_000684_070 Hb_012670_090--Hb_000684_070 Hb_012670_090--Hb_008054_030 Hb_002221_060 Hb_002221_060 Hb_000230_300--Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_000230_300--Hb_000003_380 Hb_000230_300--Hb_004137_040 Hb_000230_300--Hb_000103_200 Hb_000230_300--Hb_000028_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0255948 0.0808563 0.128082 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0931112

CAGE analysis