Hb_001767_020

Information

Type -
Description -
Location Contig1767: 19768-29510
Sequence    

Annotation

kegg
ID rcu:RCOM_0173790
description Auxin-induced protein 5NG4, putative
nr
ID XP_012073978.1
description PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
swissprot
ID Q4PT23
description WAT1-related protein At1g25270 OS=Arabidopsis thaliana GN=At1g25270 PE=2 SV=1
trembl
ID A0A067LC71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06597 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at1g25270-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16950: 19643-29454
cDNA
(Sanger)
(ID:Location)		 015_N17.ab1: 22052-29449 , 022_O20.ab1: 21290-29449 , 047_F17.ab1: 21098-29454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_020 0.0 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
2 Hb_004460_020 0.1522373928 - - chaperone protein DNAj, putative [Ricinus communis]
3 Hb_041774_010 0.1543246083 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_005867_080 0.1689245738 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
5 Hb_001668_030 0.1878427641 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001775_040 0.1879459339 - - -
7 Hb_008147_030 0.1958626825 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
8 Hb_004102_130 0.1997942327 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000012_300 0.2064178985 - - -
10 Hb_004480_070 0.2091599331 - - cytochrome P450, putative [Ricinus communis]
11 Hb_002253_110 0.2113012203 - - cysteine desulfurylase, putative [Ricinus communis]
12 Hb_005568_070 0.2181042272 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
13 Hb_010290_020 0.2192426134 - - RAB6-interacting protein, putative [Ricinus communis]
14 Hb_002769_040 0.2198429243 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
15 Hb_003073_130 0.2206917695 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
16 Hb_001268_230 0.2253186204 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_001146_070 0.228012558 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
18 Hb_003540_140 0.2282832317 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
19 Hb_005656_060 0.2298227389 - - -
20 Hb_001159_210 0.234179307 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]

Gene co-expression network

sample Hb_001767_020 Hb_001767_020 Hb_004460_020 Hb_004460_020 Hb_001767_020--Hb_004460_020 Hb_041774_010 Hb_041774_010 Hb_001767_020--Hb_041774_010 Hb_005867_080 Hb_005867_080 Hb_001767_020--Hb_005867_080 Hb_001668_030 Hb_001668_030 Hb_001767_020--Hb_001668_030 Hb_001775_040 Hb_001775_040 Hb_001767_020--Hb_001775_040 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_004102_130 Hb_004102_130 Hb_004460_020--Hb_004102_130 Hb_000038_150 Hb_000038_150 Hb_004460_020--Hb_000038_150 Hb_001159_210 Hb_001159_210 Hb_004460_020--Hb_001159_210 Hb_004460_020--Hb_008147_030 Hb_001268_230 Hb_001268_230 Hb_004460_020--Hb_001268_230 Hb_003073_130 Hb_003073_130 Hb_041774_010--Hb_003073_130 Hb_098466_010 Hb_098466_010 Hb_041774_010--Hb_098466_010 Hb_041774_010--Hb_001668_030 Hb_058884_010 Hb_058884_010 Hb_041774_010--Hb_058884_010 Hb_041774_010--Hb_005867_080 Hb_005656_060 Hb_005656_060 Hb_005867_080--Hb_005656_060 Hb_005867_080--Hb_004102_130 Hb_011021_030 Hb_011021_030 Hb_005867_080--Hb_011021_030 Hb_000208_290 Hb_000208_290 Hb_005867_080--Hb_000208_290 Hb_004156_060 Hb_004156_060 Hb_005867_080--Hb_004156_060 Hb_002253_110 Hb_002253_110 Hb_001668_030--Hb_002253_110 Hb_001513_020 Hb_001513_020 Hb_001668_030--Hb_001513_020 Hb_004480_070 Hb_004480_070 Hb_001668_030--Hb_004480_070 Hb_001675_060 Hb_001675_060 Hb_001668_030--Hb_001675_060 Hb_001668_030--Hb_004460_020 Hb_001775_040--Hb_004460_020 Hb_000012_300 Hb_000012_300 Hb_001775_040--Hb_000012_300 Hb_001775_040--Hb_001668_030 Hb_001775_040--Hb_004480_070 Hb_001775_040--Hb_004102_130 Hb_000548_010 Hb_000548_010 Hb_008147_030--Hb_000548_010 Hb_008147_030--Hb_001268_230 Hb_141838_010 Hb_141838_010 Hb_008147_030--Hb_141838_010 Hb_003320_030 Hb_003320_030 Hb_008147_030--Hb_003320_030 Hb_031862_170 Hb_031862_170 Hb_008147_030--Hb_031862_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.763 4.42309 0.290246 2.81964 218.925 260.599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75251 6.06049 76.8263 7.34465 0.715882

CAGE analysis