Hb_001767_100

Information

Type -
Description -
Location Contig1767: 98647-102746
Sequence    

Annotation

kegg
ID rcu:RCOM_0152430
description cation efflux protein/ zinc transporter, putative
nr
ID XP_002533664.1
description cation efflux protein/ zinc transporter, putative [Ricinus communis]
swissprot
ID Q5NA18
description Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1
trembl
ID B9T5Z5
description Cation efflux protein/ zinc transporter, putative OS=Ricinus communis GN=RCOM_0152430 PE=4 SV=1
Gene Ontology
ID GO:0005384
description metal tolerance protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16957: 98631-102565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_100 0.0 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
2 Hb_006824_020 0.0849752462 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
3 Hb_002249_140 0.092717104 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
4 Hb_157854_010 0.0964060404 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
5 Hb_000732_260 0.0972676027 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
6 Hb_004012_010 0.0985096603 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
7 Hb_002762_060 0.0992802533 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
8 Hb_000272_100 0.1000773936 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
9 Hb_026198_050 0.1015129596 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
10 Hb_021068_050 0.1021234927 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
11 Hb_031089_010 0.1022334988 - - DNA binding protein, putative [Ricinus communis]
12 Hb_003688_100 0.1032025862 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
13 Hb_000282_060 0.103513778 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
14 Hb_000771_110 0.1047923463 - - protein phosphatase 2C [Hevea brasiliensis]
15 Hb_004722_060 0.1059179729 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
16 Hb_134226_010 0.108363082 - - 40S ribosomal protein S21e, putative [Ricinus communis]
17 Hb_004607_140 0.1095256159 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
18 Hb_011537_010 0.1104931101 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
19 Hb_001143_170 0.1106989025 - - nucellin, putative [Ricinus communis]
20 Hb_033491_010 0.1112282751 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]

Gene co-expression network

sample Hb_001767_100 Hb_001767_100 Hb_006824_020 Hb_006824_020 Hb_001767_100--Hb_006824_020 Hb_002249_140 Hb_002249_140 Hb_001767_100--Hb_002249_140 Hb_157854_010 Hb_157854_010 Hb_001767_100--Hb_157854_010 Hb_000732_260 Hb_000732_260 Hb_001767_100--Hb_000732_260 Hb_004012_010 Hb_004012_010 Hb_001767_100--Hb_004012_010 Hb_002762_060 Hb_002762_060 Hb_001767_100--Hb_002762_060 Hb_006775_080 Hb_006775_080 Hb_006824_020--Hb_006775_080 Hb_006824_020--Hb_000732_260 Hb_021068_050 Hb_021068_050 Hb_006824_020--Hb_021068_050 Hb_000676_220 Hb_000676_220 Hb_006824_020--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_006824_020--Hb_006569_020 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_000481_010 Hb_000481_010 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090 Hb_157854_010--Hb_002762_060 Hb_118977_020 Hb_118977_020 Hb_157854_010--Hb_118977_020 Hb_003086_020 Hb_003086_020 Hb_157854_010--Hb_003086_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_004607_140 Hb_004607_140 Hb_157854_010--Hb_004607_140 Hb_033491_010 Hb_033491_010 Hb_000732_260--Hb_033491_010 Hb_000282_060 Hb_000282_060 Hb_000732_260--Hb_000282_060 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_024835_030 Hb_024835_030 Hb_004012_010--Hb_024835_030 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_004012_010--Hb_006775_080 Hb_004920_040 Hb_004920_040 Hb_004012_010--Hb_004920_040 Hb_004012_010--Hb_003185_020 Hb_004012_010--Hb_002762_060 Hb_002762_060--Hb_024835_030 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.313 44.4297 18.5678 26.5634 144.468 91.9378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.52 100.727 90.1366 43.0812 2.37709

CAGE analysis