Hb_001767_120

Information

Type -
Description -
Location Contig1767: 121742-122861
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16960: 121718-129658 , PASA_asmbl_16961: 122192-123074 , PASA_asmbl_16963: 121687-129757 , PASA_asmbl_16964: 121687-129755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_120 0.0 - - -
2 Hb_005714_130 0.1200533199 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
3 Hb_001752_040 0.1217316781 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
4 Hb_002508_010 0.1373037568 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
5 Hb_128998_010 0.1382900166 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
6 Hb_121467_010 0.1432589956 - - tubulin-specific chaperone E, putative [Ricinus communis]
7 Hb_171788_010 0.1450211924 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
8 Hb_000429_250 0.1466624179 - - hypothetical protein L484_000744 [Morus notabilis]
9 Hb_142751_010 0.1484383737 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002411_130 0.1485838993 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
11 Hb_032496_030 0.1501408819 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
12 Hb_005054_070 0.1504883946 - - unnamed protein product [Vitis vinifera]
13 Hb_000486_060 0.1513938095 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
14 Hb_106411_010 0.1515635344 - - Ribosomal protein S25 family protein [Theobroma cacao]
15 Hb_000176_120 0.1562312641 - - seryl-tRNA synthetase, putative [Ricinus communis]
16 Hb_000159_110 0.1600376918 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
17 Hb_083043_010 0.1600517986 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_041392_010 0.1602498865 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
19 Hb_001623_290 0.1640230791 - - unknown [Populus trichocarpa]
20 Hb_001623_300 0.164225451 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]

Gene co-expression network

sample Hb_001767_120 Hb_001767_120 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_001752_040 Hb_001752_040 Hb_001767_120--Hb_001752_040 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_128998_010 Hb_128998_010 Hb_001767_120--Hb_128998_010 Hb_121467_010 Hb_121467_010 Hb_001767_120--Hb_121467_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010 Hb_010565_010 Hb_010565_010 Hb_005714_130--Hb_010565_010 Hb_002007_180 Hb_002007_180 Hb_005714_130--Hb_002007_180 Hb_041392_010 Hb_041392_010 Hb_005714_130--Hb_041392_010 Hb_005367_010 Hb_005367_010 Hb_005714_130--Hb_005367_010 Hb_005714_130--Hb_128998_010 Hb_002411_130 Hb_002411_130 Hb_001752_040--Hb_002411_130 Hb_000025_050 Hb_000025_050 Hb_001752_040--Hb_000025_050 Hb_106411_010 Hb_106411_010 Hb_001752_040--Hb_106411_010 Hb_019813_010 Hb_019813_010 Hb_001752_040--Hb_019813_010 Hb_000803_110 Hb_000803_110 Hb_001752_040--Hb_000803_110 Hb_116596_010 Hb_116596_010 Hb_002508_010--Hb_116596_010 Hb_002508_010--Hb_041392_010 Hb_002508_010--Hb_106411_010 Hb_150204_010 Hb_150204_010 Hb_002508_010--Hb_150204_010 Hb_002508_010--Hb_000025_050 Hb_112047_010 Hb_112047_010 Hb_128998_010--Hb_112047_010 Hb_010504_030 Hb_010504_030 Hb_128998_010--Hb_010504_030 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_000429_250 Hb_000429_250 Hb_128998_010--Hb_000429_250 Hb_000007_460 Hb_000007_460 Hb_128998_010--Hb_000007_460 Hb_088428_010 Hb_088428_010 Hb_121467_010--Hb_088428_010 Hb_000159_110 Hb_000159_110 Hb_121467_010--Hb_000159_110 Hb_009119_030 Hb_009119_030 Hb_121467_010--Hb_009119_030 Hb_121467_010--Hb_002411_130 Hb_070469_010 Hb_070469_010 Hb_121467_010--Hb_070469_010 Hb_139859_010 Hb_139859_010 Hb_171788_010--Hb_139859_010 Hb_083043_010 Hb_083043_010 Hb_171788_010--Hb_083043_010 Hb_006455_110 Hb_006455_110 Hb_171788_010--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_171788_010--Hb_003711_040 Hb_030328_010 Hb_030328_010 Hb_171788_010--Hb_030328_010 Hb_000486_060 Hb_000486_060 Hb_171788_010--Hb_000486_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2637 0.869444 1.19625 2.80323 3.07569 8.56275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.984821 2.12803 0.597174 0.765261 0.326837

CAGE analysis