Hb_001769_010

Information

Type -
Description -
Location Contig1769: 12698-13783
Sequence    

Annotation

kegg
ID rcu:RCOM_1587270
description hypothetical protein
nr
ID XP_002510084.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R6Z1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010128_090 0.0961890053 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
3 Hb_000865_080 0.0984835762 - - arsenite-resistance protein, putative [Ricinus communis]
4 Hb_155702_010 0.1055449077 - - Tetraspanin-5 [Gossypium arboreum]
5 Hb_023827_040 0.1087383561 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
6 Hb_003878_140 0.1108888235 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
7 Hb_000224_060 0.1128789827 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
8 Hb_017075_030 0.113632918 - - helicase, putative [Ricinus communis]
9 Hb_000336_140 0.113879788 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001516_100 0.1161648901 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
11 Hb_006316_070 0.1163716372 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
12 Hb_001584_170 0.1166267103 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_161072_030 0.1177644371 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
14 Hb_001157_180 0.117852484 - - protein binding protein, putative [Ricinus communis]
15 Hb_003106_150 0.1201735061 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
16 Hb_004310_050 0.122357504 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
17 Hb_000363_130 0.122497636 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
18 Hb_000421_120 0.1236324383 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
19 Hb_003206_030 0.1238129901 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
20 Hb_030565_090 0.1242736333 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]

Gene co-expression network

sample Hb_001769_010 Hb_001769_010 Hb_010128_090 Hb_010128_090 Hb_001769_010--Hb_010128_090 Hb_000865_080 Hb_000865_080 Hb_001769_010--Hb_000865_080 Hb_155702_010 Hb_155702_010 Hb_001769_010--Hb_155702_010 Hb_023827_040 Hb_023827_040 Hb_001769_010--Hb_023827_040 Hb_003878_140 Hb_003878_140 Hb_001769_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_001769_010--Hb_000224_060 Hb_001157_180 Hb_001157_180 Hb_010128_090--Hb_001157_180 Hb_000665_030 Hb_000665_030 Hb_010128_090--Hb_000665_030 Hb_017075_030 Hb_017075_030 Hb_010128_090--Hb_017075_030 Hb_010128_090--Hb_003878_140 Hb_000310_080 Hb_000310_080 Hb_010128_090--Hb_000310_080 Hb_004920_130 Hb_004920_130 Hb_010128_090--Hb_004920_130 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_011465_030 Hb_011465_030 Hb_155702_010--Hb_011465_030 Hb_155702_010--Hb_017075_030 Hb_002002_030 Hb_002002_030 Hb_155702_010--Hb_002002_030 Hb_032202_240 Hb_032202_240 Hb_155702_010--Hb_032202_240 Hb_003106_150 Hb_003106_150 Hb_155702_010--Hb_003106_150 Hb_076693_020 Hb_076693_020 Hb_023827_040--Hb_076693_020 Hb_045793_010 Hb_045793_010 Hb_023827_040--Hb_045793_010 Hb_023827_040--Hb_000025_360 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110 Hb_003878_140--Hb_000224_060 Hb_002977_010 Hb_002977_010 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_003878_140--Hb_000865_080 Hb_003878_140--Hb_017075_030 Hb_000224_060--Hb_000291_190 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000224_060--Hb_000025_360 Hb_000224_060--Hb_001616_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6248 2.28448 0.311178 0.479067 1.09694 1.94872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.869695 0.864079 0.93254 0.737018 0.370335

CAGE analysis