Hb_001769_020

Information

Type -
Description -
Location Contig1769: 14017-16759
Sequence    

Annotation

kegg
ID sot:102590838
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like
nr
ID XP_012068207.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9FJW4
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
trembl
ID A0A067LBX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16016 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16969: 14268-16677 , PASA_asmbl_16970: 14029-16647 , PASA_asmbl_16971: 14741-16692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_020 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
2 Hb_004374_050 0.1010611266 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002374_440 0.1341910258 - - conserved hypothetical protein [Ricinus communis]
4 Hb_179511_010 0.1463070796 - - -
5 Hb_000008_230 0.1529366718 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
6 Hb_010068_030 0.1667419664 - - aconitase, putative [Ricinus communis]
7 Hb_012340_020 0.168093467 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
8 Hb_000258_130 0.1699018551 - - -
9 Hb_005228_100 0.1734247186 - - -
10 Hb_004645_040 0.1735763928 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
11 Hb_002843_100 0.1777564372 - - -
12 Hb_003688_200 0.1787343205 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000317_080 0.1841728129 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
14 Hb_002168_020 0.1948143688 - - ATP binding protein, putative [Ricinus communis]
15 Hb_029388_040 0.1970494199 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
16 Hb_003581_110 0.1981716436 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
17 Hb_003097_190 0.2016316224 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
18 Hb_004097_020 0.2027766355 - - conserved hypothetical protein [Ricinus communis]
19 Hb_020730_010 0.2066747524 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
20 Hb_002311_250 0.2077183485 - - hypothetical protein JCGZ_18936 [Jatropha curcas]

Gene co-expression network

sample Hb_001769_020 Hb_001769_020 Hb_004374_050 Hb_004374_050 Hb_001769_020--Hb_004374_050 Hb_002374_440 Hb_002374_440 Hb_001769_020--Hb_002374_440 Hb_179511_010 Hb_179511_010 Hb_001769_020--Hb_179511_010 Hb_000008_230 Hb_000008_230 Hb_001769_020--Hb_000008_230 Hb_010068_030 Hb_010068_030 Hb_001769_020--Hb_010068_030 Hb_012340_020 Hb_012340_020 Hb_001769_020--Hb_012340_020 Hb_004374_050--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_004374_050--Hb_005228_100 Hb_000258_130 Hb_000258_130 Hb_004374_050--Hb_000258_130 Hb_004374_050--Hb_010068_030 Hb_004645_040 Hb_004645_040 Hb_004374_050--Hb_004645_040 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_002374_440--Hb_005228_100 Hb_002374_440--Hb_012340_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_003581_110 Hb_003581_110 Hb_179511_010--Hb_003581_110 Hb_000392_280 Hb_000392_280 Hb_179511_010--Hb_000392_280 Hb_004032_050 Hb_004032_050 Hb_179511_010--Hb_004032_050 Hb_009801_010 Hb_009801_010 Hb_179511_010--Hb_009801_010 Hb_001754_170 Hb_001754_170 Hb_179511_010--Hb_001754_170 Hb_179511_010--Hb_000258_130 Hb_008749_050 Hb_008749_050 Hb_000008_230--Hb_008749_050 Hb_000008_230--Hb_012340_020 Hb_002344_090 Hb_002344_090 Hb_000008_230--Hb_002344_090 Hb_035947_010 Hb_035947_010 Hb_000008_230--Hb_035947_010 Hb_000008_230--Hb_002374_440 Hb_003097_190 Hb_003097_190 Hb_010068_030--Hb_003097_190 Hb_000152_560 Hb_000152_560 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_010068_030--Hb_000258_130 Hb_001534_070 Hb_001534_070 Hb_012340_020--Hb_001534_070 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_012340_020--Hb_003688_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88118 8.04232 1.71783 1.94041 40.3218 11.0781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.26584 11.0191 3.16272 1.02921 0.319071

CAGE analysis