Hb_001769_060

Information

Type -
Description -
Location Contig1769: 27293-30030
Sequence    

Annotation

kegg
ID rcu:RCOM_1587300
description hypothetical protein
nr
ID XP_012068209.1
description PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
swissprot
ID Q84WW1
description F-box protein At3g12350 OS=Arabidopsis thaliana GN=At3g12350 PE=2 SV=1
trembl
ID A0A067KZH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16018 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16973: 27317-28059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_060 0.0 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
2 Hb_002811_280 0.1176401068 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
3 Hb_000221_240 0.1212172238 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
4 Hb_000110_050 0.1314620609 - - -
5 Hb_001623_190 0.1334604299 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
6 Hb_001946_310 0.1373096467 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
7 Hb_003044_080 0.1472177538 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
8 Hb_000548_070 0.1494476751 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
9 Hb_000172_280 0.1510328568 - - aspartate aminotransferase, putative [Ricinus communis]
10 Hb_001616_070 0.1513957257 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
11 Hb_000684_520 0.1565971507 - - glutathione S-transferase L3-like [Jatropha curcas]
12 Hb_001205_080 0.1573145608 - - Protein FAM96B, putative [Ricinus communis]
13 Hb_000197_190 0.1573950647 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
14 Hb_002631_130 0.1604402638 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
15 Hb_001510_020 0.1607886285 - - Diaminopimelate epimerase, putative [Ricinus communis]
16 Hb_021943_090 0.1654441743 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
17 Hb_001799_060 0.1660285421 - - Rab6 [Hevea brasiliensis]
18 Hb_002781_050 0.1660473338 - - cytochrome B5 isoform 1, putative [Ricinus communis]
19 Hb_000038_120 0.169444781 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
20 Hb_000800_090 0.1698460195 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001769_060 Hb_001769_060 Hb_002811_280 Hb_002811_280 Hb_001769_060--Hb_002811_280 Hb_000221_240 Hb_000221_240 Hb_001769_060--Hb_000221_240 Hb_000110_050 Hb_000110_050 Hb_001769_060--Hb_000110_050 Hb_001623_190 Hb_001623_190 Hb_001769_060--Hb_001623_190 Hb_001946_310 Hb_001946_310 Hb_001769_060--Hb_001946_310 Hb_003044_080 Hb_003044_080 Hb_001769_060--Hb_003044_080 Hb_002811_280--Hb_000110_050 Hb_010172_110 Hb_010172_110 Hb_002811_280--Hb_010172_110 Hb_000172_280 Hb_000172_280 Hb_002811_280--Hb_000172_280 Hb_002007_320 Hb_002007_320 Hb_002811_280--Hb_002007_320 Hb_001616_070 Hb_001616_070 Hb_002811_280--Hb_001616_070 Hb_002093_060 Hb_002093_060 Hb_000221_240--Hb_002093_060 Hb_001104_100 Hb_001104_100 Hb_000221_240--Hb_001104_100 Hb_135757_020 Hb_135757_020 Hb_000221_240--Hb_135757_020 Hb_001957_010 Hb_001957_010 Hb_000221_240--Hb_001957_010 Hb_001104_230 Hb_001104_230 Hb_000221_240--Hb_001104_230 Hb_048476_060 Hb_048476_060 Hb_000110_050--Hb_048476_060 Hb_000402_130 Hb_000402_130 Hb_000110_050--Hb_000402_130 Hb_012305_130 Hb_012305_130 Hb_000110_050--Hb_012305_130 Hb_001817_100 Hb_001817_100 Hb_000110_050--Hb_001817_100 Hb_002110_100 Hb_002110_100 Hb_000110_050--Hb_002110_100 Hb_000548_070 Hb_000548_070 Hb_001623_190--Hb_000548_070 Hb_002631_130 Hb_002631_130 Hb_001623_190--Hb_002631_130 Hb_001728_140 Hb_001728_140 Hb_001623_190--Hb_001728_140 Hb_007933_040 Hb_007933_040 Hb_001623_190--Hb_007933_040 Hb_009615_060 Hb_009615_060 Hb_001623_190--Hb_009615_060 Hb_001623_190--Hb_003044_080 Hb_000800_090 Hb_000800_090 Hb_001946_310--Hb_000800_090 Hb_001799_060 Hb_001799_060 Hb_001946_310--Hb_001799_060 Hb_001946_310--Hb_000402_130 Hb_001318_050 Hb_001318_050 Hb_001946_310--Hb_001318_050 Hb_003305_020 Hb_003305_020 Hb_001946_310--Hb_003305_020 Hb_000025_190 Hb_000025_190 Hb_001946_310--Hb_000025_190 Hb_003044_080--Hb_000548_070 Hb_003044_080--Hb_000800_090 Hb_003044_080--Hb_009615_060 Hb_003044_080--Hb_001728_140 Hb_003044_080--Hb_002631_130 Hb_000950_010 Hb_000950_010 Hb_003044_080--Hb_000950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49199 0.863649 3.7345 7.28198 0.201509 0.909368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06821 1.74082 3.04512 6.99747 2.99397

CAGE analysis