Hb_001769_070

Information

Type transcription factor
Description TF Family: LIM
Location Contig1769: 39776-41803
Sequence    

Annotation

kegg
ID rcu:RCOM_1587310
description Pollen-specific protein SF3, putative
nr
ID XP_012068211.1
description PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
swissprot
ID Q94JX5
description LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1
trembl
ID A0A067KZK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16019 PE=4 SV=1
Gene Ontology
ID GO:0005886
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16976: 39803-41687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_070 0.0 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
2 Hb_000076_280 0.0540713759 - - PREDICTED: pectinesterase-like [Populus euphratica]
3 Hb_027400_020 0.0723353633 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
4 Hb_000329_010 0.0749914449 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
5 Hb_002518_020 0.0833250584 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
6 Hb_000419_140 0.0836481095 - - Aquaporin PIP2.1, putative [Ricinus communis]
7 Hb_005000_280 0.0873147374 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
8 Hb_001777_010 0.1004740882 - - -
9 Hb_002809_080 0.1019059522 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000834_130 0.1031718608 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002616_020 0.1037176655 - - PREDICTED: peroxidase 3 [Jatropha curcas]
12 Hb_002171_020 0.1091386976 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_001645_030 0.1127682262 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
14 Hb_002203_020 0.113182974 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001138_070 0.1134939847 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_004558_060 0.1142184019 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
17 Hb_029142_040 0.114635929 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
18 Hb_000243_340 0.115611848 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
19 Hb_000462_190 0.1203989543 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
20 Hb_000568_020 0.1210006998 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_001769_070 Hb_001769_070 Hb_000076_280 Hb_000076_280 Hb_001769_070--Hb_000076_280 Hb_027400_020 Hb_027400_020 Hb_001769_070--Hb_027400_020 Hb_000329_010 Hb_000329_010 Hb_001769_070--Hb_000329_010 Hb_002518_020 Hb_002518_020 Hb_001769_070--Hb_002518_020 Hb_000419_140 Hb_000419_140 Hb_001769_070--Hb_000419_140 Hb_005000_280 Hb_005000_280 Hb_001769_070--Hb_005000_280 Hb_000076_280--Hb_027400_020 Hb_000076_280--Hb_000419_140 Hb_000076_280--Hb_000329_010 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_002809_080 Hb_002809_080 Hb_000076_280--Hb_002809_080 Hb_027400_020--Hb_002616_020 Hb_027400_020--Hb_000419_140 Hb_002869_090 Hb_002869_090 Hb_027400_020--Hb_002869_090 Hb_027400_020--Hb_000329_010 Hb_000329_010--Hb_002809_080 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010 Hb_000329_010--Hb_000419_140 Hb_002518_020--Hb_005000_280 Hb_004558_060 Hb_004558_060 Hb_002518_020--Hb_004558_060 Hb_002518_020--Hb_000076_280 Hb_002171_020 Hb_002171_020 Hb_002518_020--Hb_002171_020 Hb_002518_020--Hb_000329_010 Hb_001777_010 Hb_001777_010 Hb_000419_140--Hb_001777_010 Hb_000419_140--Hb_002616_020 Hb_005000_280--Hb_002809_080 Hb_005000_280--Hb_000076_280 Hb_005000_280--Hb_000329_010 Hb_005000_280--Hb_027400_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.923337 6.44046 17.1924 59.9544 0.382738 0.122732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0322346 0.179817 15.0329 12.9359

CAGE analysis