Hb_001769_100

Information

Type -
Description -
Location Contig1769: 81532-83809
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G027800g
description hypothetical protein
nr
ID XP_006374828.1
description hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FNM5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s01620g PE=4 SV=1
Gene Ontology
ID GO:0006661
description hypothetical protein POPTR_0014s01620g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16981: 81597-83829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_100 0.0 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
2 Hb_000419_130 0.0767175757 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
3 Hb_000645_190 0.080981334 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
4 Hb_012265_010 0.1005910197 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
5 Hb_003623_050 0.1035669106 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011161_050 0.1054641696 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
7 Hb_001950_120 0.1075992255 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
8 Hb_010812_010 0.1088669694 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
9 Hb_000086_550 0.1089747798 - - Os02g0814700 [Oryza sativa Japonica Group]
10 Hb_000085_330 0.1109435018 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
11 Hb_005357_130 0.1109879899 - - hypothetical protein L484_012905 [Morus notabilis]
12 Hb_000163_130 0.1118856965 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
13 Hb_002835_320 0.1155895445 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_008847_020 0.1171774413 - - 40S ribosomal protein S17C [Hevea brasiliensis]
15 Hb_000199_070 0.1192362289 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001085_010 0.1199006366 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
17 Hb_004754_070 0.1200259328 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
18 Hb_001571_090 0.1205668966 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
19 Hb_009421_040 0.1225099661 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
20 Hb_000449_040 0.1230225173 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001769_100 Hb_001769_100 Hb_000419_130 Hb_000419_130 Hb_001769_100--Hb_000419_130 Hb_000645_190 Hb_000645_190 Hb_001769_100--Hb_000645_190 Hb_012265_010 Hb_012265_010 Hb_001769_100--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001769_100--Hb_003623_050 Hb_011161_050 Hb_011161_050 Hb_001769_100--Hb_011161_050 Hb_001950_120 Hb_001950_120 Hb_001769_100--Hb_001950_120 Hb_001610_130 Hb_001610_130 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000134_020 Hb_000134_020 Hb_000645_190--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460 Hb_000645_190--Hb_003058_220 Hb_003086_100 Hb_003086_100 Hb_012265_010--Hb_003086_100 Hb_001433_050 Hb_001433_050 Hb_012265_010--Hb_001433_050 Hb_130291_010 Hb_130291_010 Hb_012265_010--Hb_130291_010 Hb_148930_010 Hb_148930_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030 Hb_000136_170 Hb_000136_170 Hb_003623_050--Hb_000136_170 Hb_005357_130 Hb_005357_130 Hb_003623_050--Hb_005357_130 Hb_026048_070 Hb_026048_070 Hb_003623_050--Hb_026048_070 Hb_000086_550 Hb_000086_550 Hb_003623_050--Hb_000086_550 Hb_011644_030 Hb_011644_030 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000975_110 Hb_000975_110 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_011161_050--Hb_000199_070 Hb_011161_050--Hb_000086_550 Hb_001950_120--Hb_012265_010 Hb_001950_120--Hb_003623_050 Hb_000449_040 Hb_000449_040 Hb_001950_120--Hb_000449_040 Hb_001950_120--Hb_000645_190 Hb_008318_010 Hb_008318_010 Hb_001950_120--Hb_008318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2247 4.6248 8.90903 21.1967 16.127 65.6149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.5979 132.597 36.2885 28.3719 18.3359

CAGE analysis