Hb_001769_130

Information

Type -
Description -
Location Contig1769: 131605-132295
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_130 0.0 - - -
2 Hb_044086_010 0.1985502509 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000812_030 0.205522895 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_005401_010 0.2104233081 - - -
5 Hb_000671_140 0.2383252724 - - hypothetical protein VITISV_003767 [Vitis vinifera]
6 Hb_004545_100 0.2458241461 - - PREDICTED: protein BONZAI 3 [Jatropha curcas]
7 Hb_004074_030 0.2504758234 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002475_130 0.2621237595 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
9 Hb_005833_020 0.2625224455 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
10 Hb_177020_010 0.262647753 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
11 Hb_002988_030 0.2661264137 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
12 Hb_002368_030 0.2683935908 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
13 Hb_002154_080 0.2699816132 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
14 Hb_006043_030 0.2731535835 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_010921_020 0.2742586198 - - PREDICTED: cyclin-SDS [Jatropha curcas]
16 Hb_002793_060 0.2763579337 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
17 Hb_000856_120 0.2835918472 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
18 Hb_002232_050 0.2846975132 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
19 Hb_001863_410 0.2871292912 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_007534_030 0.2872079433 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_001769_130 Hb_001769_130 Hb_044086_010 Hb_044086_010 Hb_001769_130--Hb_044086_010 Hb_000812_030 Hb_000812_030 Hb_001769_130--Hb_000812_030 Hb_005401_010 Hb_005401_010 Hb_001769_130--Hb_005401_010 Hb_000671_140 Hb_000671_140 Hb_001769_130--Hb_000671_140 Hb_004545_100 Hb_004545_100 Hb_001769_130--Hb_004545_100 Hb_004074_030 Hb_004074_030 Hb_001769_130--Hb_004074_030 Hb_044086_010--Hb_004074_030 Hb_065379_010 Hb_065379_010 Hb_044086_010--Hb_065379_010 Hb_000840_170 Hb_000840_170 Hb_044086_010--Hb_000840_170 Hb_003914_030 Hb_003914_030 Hb_044086_010--Hb_003914_030 Hb_000988_030 Hb_000988_030 Hb_044086_010--Hb_000988_030 Hb_000032_020 Hb_000032_020 Hb_000812_030--Hb_000032_020 Hb_010921_020 Hb_010921_020 Hb_000812_030--Hb_010921_020 Hb_001229_030 Hb_001229_030 Hb_000812_030--Hb_001229_030 Hb_002110_110 Hb_002110_110 Hb_000812_030--Hb_002110_110 Hb_003106_250 Hb_003106_250 Hb_000812_030--Hb_003106_250 Hb_005183_140 Hb_005183_140 Hb_000812_030--Hb_005183_140 Hb_006043_030 Hb_006043_030 Hb_005401_010--Hb_006043_030 Hb_117001_010 Hb_117001_010 Hb_005401_010--Hb_117001_010 Hb_003527_020 Hb_003527_020 Hb_005401_010--Hb_003527_020 Hb_005401_010--Hb_000671_140 Hb_042463_050 Hb_042463_050 Hb_005401_010--Hb_042463_050 Hb_000671_140--Hb_044086_010 Hb_000671_140--Hb_000840_170 Hb_006573_010 Hb_006573_010 Hb_000671_140--Hb_006573_010 Hb_000140_430 Hb_000140_430 Hb_000671_140--Hb_000140_430 Hb_002475_130 Hb_002475_130 Hb_004545_100--Hb_002475_130 Hb_008864_080 Hb_008864_080 Hb_004545_100--Hb_008864_080 Hb_007259_020 Hb_007259_020 Hb_004545_100--Hb_007259_020 Hb_002793_060 Hb_002793_060 Hb_004545_100--Hb_002793_060 Hb_011885_010 Hb_011885_010 Hb_004545_100--Hb_011885_010 Hb_033642_070 Hb_033642_070 Hb_004545_100--Hb_033642_070 Hb_002368_030 Hb_002368_030 Hb_004074_030--Hb_002368_030 Hb_002774_150 Hb_002774_150 Hb_004074_030--Hb_002774_150 Hb_004074_030--Hb_003914_030 Hb_000991_050 Hb_000991_050 Hb_004074_030--Hb_000991_050 Hb_004074_030--Hb_065379_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0425659 0.252507 0.0688747 0 0.0428311 0.0379101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0318071 0.150583

CAGE analysis