Hb_001769_150

Information

Type -
Description -
Location Contig1769: 138526-139344
Sequence    

Annotation

kegg
ID rcu:RCOM_1595220
description hypothetical protein
nr
ID XP_012072011.1
description PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16988: 138265-139531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_150 0.0 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
2 Hb_000358_010 0.0801452388 - - PREDICTED: basic blue protein [Populus euphratica]
3 Hb_036182_010 0.0887138948 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
4 Hb_006316_090 0.101992305 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_007044_260 0.1060932108 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
6 Hb_001076_010 0.1161437065 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
7 Hb_006120_140 0.1180377578 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
8 Hb_008132_010 0.1222364069 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
9 Hb_000621_100 0.1227275167 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000103_460 0.1319112638 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
11 Hb_000321_040 0.1331580216 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
12 Hb_001890_040 0.135829123 - - receptor-kinase, putative [Ricinus communis]
13 Hb_002874_010 0.1362658245 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
14 Hb_004631_040 0.1379253698 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
15 Hb_000000_040 0.139259862 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
16 Hb_020273_020 0.140222191 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_004197_020 0.140252945 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
18 Hb_028013_030 0.1451288493 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001369_550 0.1481215499 - - 21 kDa protein precursor, putative [Ricinus communis]
20 Hb_000227_020 0.1519119504 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]

Gene co-expression network

sample Hb_001769_150 Hb_001769_150 Hb_000358_010 Hb_000358_010 Hb_001769_150--Hb_000358_010 Hb_036182_010 Hb_036182_010 Hb_001769_150--Hb_036182_010 Hb_006316_090 Hb_006316_090 Hb_001769_150--Hb_006316_090 Hb_007044_260 Hb_007044_260 Hb_001769_150--Hb_007044_260 Hb_001076_010 Hb_001076_010 Hb_001769_150--Hb_001076_010 Hb_006120_140 Hb_006120_140 Hb_001769_150--Hb_006120_140 Hb_000358_010--Hb_007044_260 Hb_000358_010--Hb_006316_090 Hb_000358_010--Hb_001076_010 Hb_002874_010 Hb_002874_010 Hb_000358_010--Hb_002874_010 Hb_000103_460 Hb_000103_460 Hb_000358_010--Hb_000103_460 Hb_000621_100 Hb_000621_100 Hb_036182_010--Hb_000621_100 Hb_036182_010--Hb_006120_140 Hb_036182_010--Hb_000358_010 Hb_036182_010--Hb_006316_090 Hb_036182_010--Hb_001076_010 Hb_006316_090--Hb_000103_460 Hb_006316_090--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_006316_090--Hb_001369_550 Hb_001366_380 Hb_001366_380 Hb_006316_090--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_006316_090--Hb_004316_080 Hb_004631_040 Hb_004631_040 Hb_007044_260--Hb_004631_040 Hb_007044_260--Hb_002874_010 Hb_000032_080 Hb_000032_080 Hb_007044_260--Hb_000032_080 Hb_162378_020 Hb_162378_020 Hb_007044_260--Hb_162378_020 Hb_002686_070 Hb_002686_070 Hb_007044_260--Hb_002686_070 Hb_001076_010--Hb_002874_010 Hb_001076_010--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_001076_010--Hb_000030_080 Hb_001076_010--Hb_000103_460 Hb_006120_140--Hb_000621_100 Hb_000000_040 Hb_000000_040 Hb_006120_140--Hb_000000_040 Hb_020273_020 Hb_020273_020 Hb_006120_140--Hb_020273_020 Hb_000321_040 Hb_000321_040 Hb_006120_140--Hb_000321_040 Hb_001890_040 Hb_001890_040 Hb_006120_140--Hb_001890_040 Hb_005066_050 Hb_005066_050 Hb_006120_140--Hb_005066_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.63773 0.639891 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.603382 0.103507

CAGE analysis