Hb_001771_060

Information

Type -
Description -
Location Contig1771: 64060-66245
Sequence    

Annotation

kegg
ID tcc:TCM_007341
description Concanavalin A-like lectin protein kinase family protein
nr
ID KJB77571.1
description hypothetical protein B456_012G144100 [Gossypium raimondii]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID A0A0D2V5E7
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G144100 PE=4 SV=1
Gene Ontology
ID GO:0016301
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001771_060 0.0 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
2 Hb_004108_120 0.1197619985 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
3 Hb_002999_130 0.141484189 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
4 Hb_028285_020 0.1521319637 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
5 Hb_002999_140 0.1553578982 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_009557_080 0.1558727863 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
7 Hb_000656_260 0.1597004549 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
8 Hb_073171_050 0.1613799914 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
9 Hb_115114_010 0.1615261167 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000140_220 0.1645383979 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
11 Hb_001046_040 0.1647455335 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_004907_070 0.1650104035 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
13 Hb_004324_220 0.1661312322 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
14 Hb_001821_050 0.1677611735 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
15 Hb_001269_240 0.168311645 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
16 Hb_003683_070 0.1692199002 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_000594_150 0.1707481123 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
18 Hb_007257_070 0.1710749656 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
19 Hb_012799_040 0.1713518816 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
20 Hb_036492_020 0.1739601251 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]

Gene co-expression network

sample Hb_001771_060 Hb_001771_060 Hb_004108_120 Hb_004108_120 Hb_001771_060--Hb_004108_120 Hb_002999_130 Hb_002999_130 Hb_001771_060--Hb_002999_130 Hb_028285_020 Hb_028285_020 Hb_001771_060--Hb_028285_020 Hb_002999_140 Hb_002999_140 Hb_001771_060--Hb_002999_140 Hb_009557_080 Hb_009557_080 Hb_001771_060--Hb_009557_080 Hb_000656_260 Hb_000656_260 Hb_001771_060--Hb_000656_260 Hb_004108_120--Hb_028285_020 Hb_004108_120--Hb_002999_130 Hb_019026_040 Hb_019026_040 Hb_004108_120--Hb_019026_040 Hb_152414_010 Hb_152414_010 Hb_004108_120--Hb_152414_010 Hb_073171_050 Hb_073171_050 Hb_004108_120--Hb_073171_050 Hb_002999_130--Hb_073171_050 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_001369_020 Hb_001369_020 Hb_002999_130--Hb_001369_020 Hb_028285_020--Hb_073171_050 Hb_028285_020--Hb_001369_020 Hb_007193_030 Hb_007193_030 Hb_028285_020--Hb_007193_030 Hb_028285_020--Hb_002999_130 Hb_002783_140 Hb_002783_140 Hb_028285_020--Hb_002783_140 Hb_019837_010 Hb_019837_010 Hb_002999_140--Hb_019837_010 Hb_000808_260 Hb_000808_260 Hb_002999_140--Hb_000808_260 Hb_004864_010 Hb_004864_010 Hb_002999_140--Hb_004864_010 Hb_003126_010 Hb_003126_010 Hb_002999_140--Hb_003126_010 Hb_002999_140--Hb_000594_150 Hb_002725_080 Hb_002725_080 Hb_009557_080--Hb_002725_080 Hb_001269_240 Hb_001269_240 Hb_009557_080--Hb_001269_240 Hb_115114_010 Hb_115114_010 Hb_009557_080--Hb_115114_010 Hb_010417_110 Hb_010417_110 Hb_009557_080--Hb_010417_110 Hb_004879_030 Hb_004879_030 Hb_009557_080--Hb_004879_030 Hb_000140_220 Hb_000140_220 Hb_009557_080--Hb_000140_220 Hb_012799_040 Hb_012799_040 Hb_000656_260--Hb_012799_040 Hb_036492_020 Hb_036492_020 Hb_000656_260--Hb_036492_020 Hb_029584_110 Hb_029584_110 Hb_000656_260--Hb_029584_110 Hb_006358_030 Hb_006358_030 Hb_000656_260--Hb_006358_030 Hb_000402_180 Hb_000402_180 Hb_000656_260--Hb_000402_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.148281 0.0882592 0.0718692 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0172598 0 0.0137301 0.10951

CAGE analysis