Hb_001771_120

Information

Type -
Description -
Location Contig1771: 118916-126231
Sequence    

Annotation

kegg
ID rcu:RCOM_1279970
description Vacuolar protein sorting-associated protein VPS4, putative (EC:3.6.4.3)
nr
ID AIN75626.1
description K+ transport growth defect-like protein [Hevea brasiliensis]
swissprot
ID Q9ZNT0
description Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana GN=SKD1 PE=1 SV=1
trembl
ID A0A088QDC7
description K+ transport growth defect-like protein OS=Hevea brasiliensis GN=SKD1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description vacuolar protein sorting-associated protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17003: 118939-126168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001771_120 0.0 - - K+ transport growth defect-like protein [Hevea brasiliensis]
2 Hb_007943_120 0.0573769557 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
3 Hb_002221_050 0.0644908526 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
4 Hb_000329_130 0.0675744487 - - beta-tubulin cofactor d, putative [Ricinus communis]
5 Hb_000424_010 0.0714579807 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
6 Hb_009151_020 0.0733245904 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
7 Hb_002477_130 0.074110721 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000032_490 0.0767674832 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
9 Hb_015026_050 0.0774315782 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_000320_380 0.0787323921 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
11 Hb_001616_050 0.0787638491 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_028872_120 0.0804421641 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
13 Hb_147737_010 0.0809567582 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
14 Hb_007558_120 0.0817329266 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
15 Hb_003680_230 0.0821088475 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
16 Hb_000343_210 0.0825563902 - - ran-binding protein, putative [Ricinus communis]
17 Hb_004635_050 0.0831808077 - - nucleolar phosphoprotein, putative [Ricinus communis]
18 Hb_004701_030 0.0833137521 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_002499_070 0.0838585311 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
20 Hb_005188_060 0.0845280105 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]

Gene co-expression network

sample Hb_001771_120 Hb_001771_120 Hb_007943_120 Hb_007943_120 Hb_001771_120--Hb_007943_120 Hb_002221_050 Hb_002221_050 Hb_001771_120--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_001771_120--Hb_000329_130 Hb_000424_010 Hb_000424_010 Hb_001771_120--Hb_000424_010 Hb_009151_020 Hb_009151_020 Hb_001771_120--Hb_009151_020 Hb_002477_130 Hb_002477_130 Hb_001771_120--Hb_002477_130 Hb_005188_060 Hb_005188_060 Hb_007943_120--Hb_005188_060 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_005883_010 Hb_005883_010 Hb_007943_120--Hb_005883_010 Hb_004635_050 Hb_004635_050 Hb_007943_120--Hb_004635_050 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_000329_130--Hb_009151_020 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_000424_010--Hb_000529_260 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_000365_140 Hb_000365_140 Hb_002477_130--Hb_000365_140 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_000640_220 Hb_000640_220 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.349 114.268 81.5926 50.9503 183.086 166.748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.7808 49.1682 65.6652 45.2042 51.347

CAGE analysis