Hb_001771_130

Information

Type -
Description -
Location Contig1771: 127765-130404
Sequence    

Annotation

kegg
ID vvi:100240768
description pentatricopeptide repeat-containing protein At2g27610
nr
ID XP_012072804.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
swissprot
ID Q9ZUW3
description Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
trembl
ID A0A067L0G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07935 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17005: 129027-129269 , PASA_asmbl_17006: 129580-129813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001771_130 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
2 Hb_001437_180 0.0763977783 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
3 Hb_000011_080 0.0813616732 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
4 Hb_001871_040 0.082734537 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
5 Hb_004734_060 0.0860566258 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
6 Hb_001943_010 0.087747631 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_000386_030 0.087838777 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
8 Hb_000173_400 0.0889605858 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
9 Hb_000390_070 0.0910340465 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
10 Hb_033152_080 0.0919669127 - - RNA-binding protein Nova-1, putative [Ricinus communis]
11 Hb_005205_020 0.0938621002 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
12 Hb_123777_030 0.0943107529 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
13 Hb_000209_020 0.0952381373 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
14 Hb_000184_130 0.0972234679 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
15 Hb_004055_040 0.0972760116 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
16 Hb_002039_010 0.098098937 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_000627_080 0.0986211906 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_001307_140 0.0997482692 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
19 Hb_025012_010 0.1026789999 - - PREDICTED: importin-4 [Vitis vinifera]
20 Hb_005399_010 0.1032721385 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]

Gene co-expression network

sample Hb_001771_130 Hb_001771_130 Hb_001437_180 Hb_001437_180 Hb_001771_130--Hb_001437_180 Hb_000011_080 Hb_000011_080 Hb_001771_130--Hb_000011_080 Hb_001871_040 Hb_001871_040 Hb_001771_130--Hb_001871_040 Hb_004734_060 Hb_004734_060 Hb_001771_130--Hb_004734_060 Hb_001943_010 Hb_001943_010 Hb_001771_130--Hb_001943_010 Hb_000386_030 Hb_000386_030 Hb_001771_130--Hb_000386_030 Hb_002636_050 Hb_002636_050 Hb_001437_180--Hb_002636_050 Hb_001437_180--Hb_004734_060 Hb_008085_010 Hb_008085_010 Hb_001437_180--Hb_008085_010 Hb_001437_180--Hb_000386_030 Hb_004602_040 Hb_004602_040 Hb_001437_180--Hb_004602_040 Hb_033152_080 Hb_033152_080 Hb_000011_080--Hb_033152_080 Hb_000230_080 Hb_000230_080 Hb_000011_080--Hb_000230_080 Hb_000011_080--Hb_004734_060 Hb_000173_400 Hb_000173_400 Hb_000011_080--Hb_000173_400 Hb_005324_010 Hb_005324_010 Hb_000011_080--Hb_005324_010 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_005205_020 Hb_005205_020 Hb_001943_010--Hb_005205_020 Hb_000370_030 Hb_000370_030 Hb_001943_010--Hb_000370_030 Hb_001943_010--Hb_000184_130 Hb_025012_010 Hb_025012_010 Hb_001943_010--Hb_025012_010 Hb_000316_030 Hb_000316_030 Hb_001943_010--Hb_000316_030 Hb_001584_160 Hb_001584_160 Hb_000386_030--Hb_001584_160 Hb_000577_010 Hb_000577_010 Hb_000386_030--Hb_000577_010 Hb_010710_010 Hb_010710_010 Hb_000386_030--Hb_010710_010 Hb_000386_030--Hb_000803_190 Hb_000413_180 Hb_000413_180 Hb_000386_030--Hb_000413_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01782 1.62987 0.201795 0.439421 1.9526 3.69675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03266 1.0092 1.82597 1.24863 0.725212

CAGE analysis