Hb_001771_140

Information

Type -
Description -
Location Contig1771: 130501-140742
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14710g
description transducin family protein
nr
ID XP_012072802.1
description PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
swissprot
ID Q9LXN4
description Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2
trembl
ID A0A067KRF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07934 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein hira-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17007: 135534-135798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001771_140 0.0 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
2 Hb_002900_190 0.0651770461 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
3 Hb_007894_140 0.0894018138 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
4 Hb_000020_190 0.0904394561 - - hypothetical protein RCOM_0452240 [Ricinus communis]
5 Hb_006922_100 0.0919272752 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
6 Hb_001322_190 0.0934185171 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
7 Hb_010931_120 0.0941375606 - - myosin heavy chain-related family protein [Populus trichocarpa]
8 Hb_001604_010 0.0946304384 - - 14-3-3 protein, putative [Ricinus communis]
9 Hb_001936_060 0.0948696092 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
10 Hb_001862_190 0.0953216485 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
11 Hb_000620_010 0.0953777694 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
12 Hb_033153_050 0.0972779487 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
13 Hb_000445_420 0.0986308192 - - protein transporter, putative [Ricinus communis]
14 Hb_001001_060 0.0989168605 - - -
15 Hb_004055_030 0.0993194615 - - casein kinase, putative [Ricinus communis]
16 Hb_002253_070 0.1009055741 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
17 Hb_015746_010 0.1013346543 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
18 Hb_002131_020 0.102274256 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
19 Hb_000573_020 0.1047328218 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
20 Hb_000521_080 0.1048757113 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]

Gene co-expression network

sample Hb_001771_140 Hb_001771_140 Hb_002900_190 Hb_002900_190 Hb_001771_140--Hb_002900_190 Hb_007894_140 Hb_007894_140 Hb_001771_140--Hb_007894_140 Hb_000020_190 Hb_000020_190 Hb_001771_140--Hb_000020_190 Hb_006922_100 Hb_006922_100 Hb_001771_140--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001771_140--Hb_001322_190 Hb_010931_120 Hb_010931_120 Hb_001771_140--Hb_010931_120 Hb_001386_120 Hb_001386_120 Hb_002900_190--Hb_001386_120 Hb_015746_010 Hb_015746_010 Hb_002900_190--Hb_015746_010 Hb_001604_010 Hb_001604_010 Hb_002900_190--Hb_001604_010 Hb_002900_190--Hb_010931_120 Hb_012022_030 Hb_012022_030 Hb_002900_190--Hb_012022_030 Hb_033153_050 Hb_033153_050 Hb_007894_140--Hb_033153_050 Hb_007590_080 Hb_007590_080 Hb_007894_140--Hb_007590_080 Hb_007218_080 Hb_007218_080 Hb_007894_140--Hb_007218_080 Hb_001862_190 Hb_001862_190 Hb_007894_140--Hb_001862_190 Hb_006663_100 Hb_006663_100 Hb_007894_140--Hb_006663_100 Hb_007336_020 Hb_007336_020 Hb_007894_140--Hb_007336_020 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_006922_100--Hb_001862_190 Hb_007441_120 Hb_007441_120 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020 Hb_001322_190--Hb_001862_190 Hb_005396_130 Hb_005396_130 Hb_001322_190--Hb_005396_130 Hb_001322_190--Hb_000020_190 Hb_001019_230 Hb_001019_230 Hb_001322_190--Hb_001019_230 Hb_000699_140 Hb_000699_140 Hb_001322_190--Hb_000699_140 Hb_001322_190--Hb_006922_100 Hb_010931_120--Hb_004055_030 Hb_011671_430 Hb_011671_430 Hb_010931_120--Hb_011671_430 Hb_000445_420 Hb_000445_420 Hb_010931_120--Hb_000445_420 Hb_005993_020 Hb_005993_020 Hb_010931_120--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_010931_120--Hb_002131_020 Hb_000260_220 Hb_000260_220 Hb_010931_120--Hb_000260_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7787 3.72236 3.62337 2.35745 6.25265 7.44228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.90001 4.74858 7.7969 6.11226 3.51828

CAGE analysis