Hb_001773_020

Information

Type -
Description -
Location Contig1773: 13615-15794
Sequence    

Annotation

kegg
ID pop:POPTR_0016s00980g
description POPTRDRAFT_89040; hypothetical protein
nr
ID XP_002323130.1
description hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
swissprot
ID Q9SZ46
description Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1
trembl
ID B9IH33
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00980g PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17022: 13073-15491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001773_020 0.0 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
2 Hb_000917_250 0.2337133334 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
3 Hb_001769_020 0.2353842652 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
4 Hb_080083_010 0.2370124656 - - -
5 Hb_002701_130 0.2391770603 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
6 Hb_011515_030 0.2395897007 - - -
7 Hb_074152_010 0.2408750456 - - -
8 Hb_000976_180 0.249281707 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
9 Hb_002818_100 0.2590150977 - - hypothetical protein JCGZ_14122 [Jatropha curcas]
10 Hb_004374_050 0.2634422923 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000317_080 0.2715723573 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
12 Hb_004645_040 0.2742431954 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
13 Hb_000109_150 0.2774509452 - - conserved hypothetical protein [Ricinus communis]
14 Hb_017417_010 0.2796045537 - - -
15 Hb_004032_240 0.2811979197 - - electron transporter, putative [Ricinus communis]
16 Hb_004374_060 0.2827029601 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
17 Hb_000751_090 0.2829675778 - - -
18 Hb_000115_170 0.2839535069 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
19 Hb_000318_260 0.2884178805 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
20 Hb_000236_270 0.2911170054 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001773_020 Hb_001773_020 Hb_000917_250 Hb_000917_250 Hb_001773_020--Hb_000917_250 Hb_001769_020 Hb_001769_020 Hb_001773_020--Hb_001769_020 Hb_080083_010 Hb_080083_010 Hb_001773_020--Hb_080083_010 Hb_002701_130 Hb_002701_130 Hb_001773_020--Hb_002701_130 Hb_011515_030 Hb_011515_030 Hb_001773_020--Hb_011515_030 Hb_074152_010 Hb_074152_010 Hb_001773_020--Hb_074152_010 Hb_000917_250--Hb_074152_010 Hb_007189_020 Hb_007189_020 Hb_000917_250--Hb_007189_020 Hb_000326_020 Hb_000326_020 Hb_000917_250--Hb_000326_020 Hb_006045_060 Hb_006045_060 Hb_000917_250--Hb_006045_060 Hb_000236_270 Hb_000236_270 Hb_000917_250--Hb_000236_270 Hb_004374_050 Hb_004374_050 Hb_001769_020--Hb_004374_050 Hb_002374_440 Hb_002374_440 Hb_001769_020--Hb_002374_440 Hb_179511_010 Hb_179511_010 Hb_001769_020--Hb_179511_010 Hb_000008_230 Hb_000008_230 Hb_001769_020--Hb_000008_230 Hb_010068_030 Hb_010068_030 Hb_001769_020--Hb_010068_030 Hb_012340_020 Hb_012340_020 Hb_001769_020--Hb_012340_020 Hb_005057_010 Hb_005057_010 Hb_080083_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_080083_010--Hb_000140_150 Hb_000525_040 Hb_000525_040 Hb_080083_010--Hb_000525_040 Hb_027556_010 Hb_027556_010 Hb_080083_010--Hb_027556_010 Hb_000088_060 Hb_000088_060 Hb_080083_010--Hb_000088_060 Hb_017417_010 Hb_017417_010 Hb_080083_010--Hb_017417_010 Hb_001628_110 Hb_001628_110 Hb_002701_130--Hb_001628_110 Hb_003507_020 Hb_003507_020 Hb_002701_130--Hb_003507_020 Hb_000329_610 Hb_000329_610 Hb_002701_130--Hb_000329_610 Hb_050964_020 Hb_050964_020 Hb_002701_130--Hb_050964_020 Hb_000853_370 Hb_000853_370 Hb_002701_130--Hb_000853_370 Hb_043637_010 Hb_043637_010 Hb_002701_130--Hb_043637_010 Hb_141838_010 Hb_141838_010 Hb_011515_030--Hb_141838_010 Hb_002983_100 Hb_002983_100 Hb_011515_030--Hb_002983_100 Hb_000317_080 Hb_000317_080 Hb_011515_030--Hb_000317_080 Hb_002903_120 Hb_002903_120 Hb_011515_030--Hb_002903_120 Hb_004092_010 Hb_004092_010 Hb_011515_030--Hb_004092_010 Hb_003320_030 Hb_003320_030 Hb_011515_030--Hb_003320_030 Hb_074152_010--Hb_000236_270 Hb_074152_010--Hb_006045_060 Hb_000721_020 Hb_000721_020 Hb_074152_010--Hb_000721_020 Hb_074152_010--Hb_000326_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.4887 11.8888 0.91146 1.23725 386.568 53.8548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4037 122.356 3.38394 14.8424 0.792557

CAGE analysis