Hb_001775_010

Information

Type -
Description -
Location Contig1775: 8894-11596
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_002532192.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9T1S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2161170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17029: 9126-10170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000768_080 0.0511309073 - - Mlo protein [Hevea brasiliensis]
3 Hb_008864_050 0.0583267302 - - protein binding protein, putative [Ricinus communis]
4 Hb_001080_290 0.0626448155 - - PSI reaction center subunit II [Citrus sinensis]
5 Hb_010021_040 0.063652065 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
6 Hb_002600_110 0.0706212626 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
7 Hb_001951_050 0.0765107954 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_003732_030 0.0776811241 - - gibberellin 20-oxidase, putative [Ricinus communis]
9 Hb_000629_110 0.0835381435 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
10 Hb_183479_030 0.0844491813 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
11 Hb_004920_080 0.084796743 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
12 Hb_000608_160 0.0859666521 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
13 Hb_003622_050 0.0884799724 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
14 Hb_000983_200 0.0892980607 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
15 Hb_001140_110 0.0908628373 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
16 Hb_001053_050 0.0920098522 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
17 Hb_003947_020 0.0929147495 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
18 Hb_000504_220 0.0971358557 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
19 Hb_042123_010 0.0972633619 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
20 Hb_169492_010 0.0993184001 - - PREDICTED: expansin-like B1 [Jatropha curcas]

Gene co-expression network

sample Hb_001775_010 Hb_001775_010 Hb_000768_080 Hb_000768_080 Hb_001775_010--Hb_000768_080 Hb_008864_050 Hb_008864_050 Hb_001775_010--Hb_008864_050 Hb_001080_290 Hb_001080_290 Hb_001775_010--Hb_001080_290 Hb_010021_040 Hb_010021_040 Hb_001775_010--Hb_010021_040 Hb_002600_110 Hb_002600_110 Hb_001775_010--Hb_002600_110 Hb_001951_050 Hb_001951_050 Hb_001775_010--Hb_001951_050 Hb_000768_080--Hb_008864_050 Hb_000768_080--Hb_002600_110 Hb_000768_080--Hb_010021_040 Hb_000768_080--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_000768_080--Hb_002445_020 Hb_008864_050--Hb_010021_040 Hb_003732_030 Hb_003732_030 Hb_008864_050--Hb_003732_030 Hb_000776_120 Hb_000776_120 Hb_008864_050--Hb_000776_120 Hb_004920_080 Hb_004920_080 Hb_008864_050--Hb_004920_080 Hb_001080_290--Hb_001951_050 Hb_001140_110 Hb_001140_110 Hb_001080_290--Hb_001140_110 Hb_077976_010 Hb_077976_010 Hb_001080_290--Hb_077976_010 Hb_042123_010 Hb_042123_010 Hb_001080_290--Hb_042123_010 Hb_001097_110 Hb_001097_110 Hb_001080_290--Hb_001097_110 Hb_010021_040--Hb_004920_080 Hb_018202_040 Hb_018202_040 Hb_010021_040--Hb_018202_040 Hb_005194_050 Hb_005194_050 Hb_010021_040--Hb_005194_050 Hb_183479_030 Hb_183479_030 Hb_002600_110--Hb_183479_030 Hb_048694_010 Hb_048694_010 Hb_002600_110--Hb_048694_010 Hb_002600_110--Hb_001080_290 Hb_002600_110--Hb_002445_020 Hb_001951_050--Hb_001140_110 Hb_001951_050--Hb_001097_110 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_001951_050--Hb_000815_120 Hb_001951_050--Hb_042123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.45078 6.81804 9.56084 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.038064 0 0 0.18445 74.4003

CAGE analysis