Hb_001775_040

Information

Type -
Description -
Location Contig1775: 31851-40849
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17032: 26972-40724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_040 0.0 - - -
2 Hb_001767_020 0.1879459339 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
3 Hb_004460_020 0.1941567133 - - chaperone protein DNAj, putative [Ricinus communis]
4 Hb_000012_300 0.2060330153 - - -
5 Hb_001668_030 0.2174346241 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004480_070 0.2267630531 - - cytochrome P450, putative [Ricinus communis]
7 Hb_004102_130 0.2281288935 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000103_360 0.228523504 - - -
9 Hb_010290_020 0.2386876379 - - RAB6-interacting protein, putative [Ricinus communis]
10 Hb_006901_040 0.2398052762 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000016_180 0.2444608607 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
12 Hb_002890_230 0.2470630935 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
13 Hb_003073_130 0.2479031282 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
14 Hb_001241_040 0.2479043113 - - -
15 Hb_004206_040 0.248512094 - - cytochrome P450, putative [Ricinus communis]
16 Hb_005568_070 0.2491854765 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
17 Hb_000352_130 0.2499361312 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
18 Hb_183980_010 0.2502250826 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
19 Hb_004307_040 0.2535089127 - - -
20 Hb_000213_060 0.2539064996 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001775_040 Hb_001775_040 Hb_001767_020 Hb_001767_020 Hb_001775_040--Hb_001767_020 Hb_004460_020 Hb_004460_020 Hb_001775_040--Hb_004460_020 Hb_000012_300 Hb_000012_300 Hb_001775_040--Hb_000012_300 Hb_001668_030 Hb_001668_030 Hb_001775_040--Hb_001668_030 Hb_004480_070 Hb_004480_070 Hb_001775_040--Hb_004480_070 Hb_004102_130 Hb_004102_130 Hb_001775_040--Hb_004102_130 Hb_001767_020--Hb_004460_020 Hb_041774_010 Hb_041774_010 Hb_001767_020--Hb_041774_010 Hb_005867_080 Hb_005867_080 Hb_001767_020--Hb_005867_080 Hb_001767_020--Hb_001668_030 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_004460_020--Hb_004102_130 Hb_000038_150 Hb_000038_150 Hb_004460_020--Hb_000038_150 Hb_001159_210 Hb_001159_210 Hb_004460_020--Hb_001159_210 Hb_004460_020--Hb_008147_030 Hb_001268_230 Hb_001268_230 Hb_004460_020--Hb_001268_230 Hb_000012_300--Hb_001767_020 Hb_002232_450 Hb_002232_450 Hb_000012_300--Hb_002232_450 Hb_002890_230 Hb_002890_230 Hb_000012_300--Hb_002890_230 Hb_001241_040 Hb_001241_040 Hb_000012_300--Hb_001241_040 Hb_000012_300--Hb_041774_010 Hb_002253_110 Hb_002253_110 Hb_001668_030--Hb_002253_110 Hb_001513_020 Hb_001513_020 Hb_001668_030--Hb_001513_020 Hb_001668_030--Hb_004480_070 Hb_001675_060 Hb_001675_060 Hb_001668_030--Hb_001675_060 Hb_001668_030--Hb_004460_020 Hb_004480_070--Hb_001767_020 Hb_000352_130 Hb_000352_130 Hb_004480_070--Hb_000352_130 Hb_000580_060 Hb_000580_060 Hb_004480_070--Hb_000580_060 Hb_000211_080 Hb_000211_080 Hb_004480_070--Hb_000211_080 Hb_172256_010 Hb_172256_010 Hb_004102_130--Hb_172256_010 Hb_000016_180 Hb_000016_180 Hb_004102_130--Hb_000016_180 Hb_003673_020 Hb_003673_020 Hb_004102_130--Hb_003673_020 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_000176_170 Hb_000176_170 Hb_004102_130--Hb_000176_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.428122 0.0533499 0 0 0.552432 0.921204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0948509 0.162746 0.117628 0

CAGE analysis