Hb_001775_070

Information

Type -
Description -
Location Contig1775: 75158-76181
Sequence    

Annotation

kegg
ID rcu:RCOM_1180720
description hypothetical protein
nr
ID XP_012076209.1
description PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KE41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17034: 73534-74355 , PASA_asmbl_17035: 74904-76125
cDNA
(Sanger)
(ID:Location)		 003_N24.ab1: 73534-74240 , 011_H04.ab1: 73534-74274 , 047_I04.ab1: 73534-74248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_070 0.0 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
2 Hb_004958_010 0.1579948677 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004958_020 0.2018266753 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
4 Hb_102710_010 0.2053766917 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
5 Hb_001619_030 0.2095913706 - - annexin, putative [Ricinus communis]
6 Hb_139785_020 0.2116242183 - - PREDICTED: uncharacterized protein LOC105641137 [Jatropha curcas]
7 Hb_001141_230 0.2150373554 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
8 Hb_001619_100 0.2236402589 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
9 Hb_106099_010 0.226386871 - - -
10 Hb_002687_020 0.2287072051 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027380_150 0.2288321246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_159582_010 0.2296960749 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_002774_120 0.2320779842 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
14 Hb_000236_160 0.2333270926 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
15 Hb_002003_090 0.2337561061 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
16 Hb_187236_010 0.2379744098 - - -
17 Hb_000776_040 0.2410279872 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
18 Hb_001178_090 0.2418325824 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
19 Hb_002527_060 0.2460424022 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
20 Hb_001329_180 0.2481033014 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001775_070 Hb_001775_070 Hb_004958_010 Hb_004958_010 Hb_001775_070--Hb_004958_010 Hb_004958_020 Hb_004958_020 Hb_001775_070--Hb_004958_020 Hb_102710_010 Hb_102710_010 Hb_001775_070--Hb_102710_010 Hb_001619_030 Hb_001619_030 Hb_001775_070--Hb_001619_030 Hb_139785_020 Hb_139785_020 Hb_001775_070--Hb_139785_020 Hb_001141_230 Hb_001141_230 Hb_001775_070--Hb_001141_230 Hb_001619_100 Hb_001619_100 Hb_004958_010--Hb_001619_100 Hb_001195_420 Hb_001195_420 Hb_004958_010--Hb_001195_420 Hb_004958_010--Hb_102710_010 Hb_159582_010 Hb_159582_010 Hb_004958_010--Hb_159582_010 Hb_023226_030 Hb_023226_030 Hb_004958_010--Hb_023226_030 Hb_000003_020 Hb_000003_020 Hb_004958_020--Hb_000003_020 Hb_002739_040 Hb_002739_040 Hb_004958_020--Hb_002739_040 Hb_000318_170 Hb_000318_170 Hb_004958_020--Hb_000318_170 Hb_004958_020--Hb_139785_020 Hb_001894_010 Hb_001894_010 Hb_004958_020--Hb_001894_010 Hb_078081_010 Hb_078081_010 Hb_004958_020--Hb_078081_010 Hb_102710_010--Hb_001619_100 Hb_002681_120 Hb_002681_120 Hb_102710_010--Hb_002681_120 Hb_002774_120 Hb_002774_120 Hb_102710_010--Hb_002774_120 Hb_000581_030 Hb_000581_030 Hb_102710_010--Hb_000581_030 Hb_027380_150 Hb_027380_150 Hb_102710_010--Hb_027380_150 Hb_002527_060 Hb_002527_060 Hb_001619_030--Hb_002527_060 Hb_005181_060 Hb_005181_060 Hb_001619_030--Hb_005181_060 Hb_017559_010 Hb_017559_010 Hb_001619_030--Hb_017559_010 Hb_004330_080 Hb_004330_080 Hb_001619_030--Hb_004330_080 Hb_001619_030--Hb_078081_010 Hb_000590_070 Hb_000590_070 Hb_001619_030--Hb_000590_070 Hb_139785_020--Hb_001141_230 Hb_139785_020--Hb_004958_010 Hb_139785_020--Hb_000003_020 Hb_002267_100 Hb_002267_100 Hb_139785_020--Hb_002267_100 Hb_002307_010 Hb_002307_010 Hb_139785_020--Hb_002307_010 Hb_006831_080 Hb_006831_080 Hb_001141_230--Hb_006831_080 Hb_001596_020 Hb_001596_020 Hb_001141_230--Hb_001596_020 Hb_004586_240 Hb_004586_240 Hb_001141_230--Hb_004586_240 Hb_001141_230--Hb_000003_020 Hb_028001_020 Hb_028001_020 Hb_001141_230--Hb_028001_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1509 6.89062 7.23311 31.4455 0.298638 0.577741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85077 0.131879 0 18.0681 11.622

CAGE analysis