Hb_001775_090

Information

Type -
Description -
Location Contig1775: 94764-95219
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15060g
description POPTRDRAFT_556955; hypothetical protein
nr
ID KDP34379.1
description hypothetical protein JCGZ_11262 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11262 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17040: 95860-98027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_090 0.0 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
2 Hb_173271_010 0.1422684787 - - Disease resistance protein RPP13, putative [Ricinus communis]
3 Hb_000577_050 0.1534083274 - - -
4 Hb_000162_130 0.1614731125 - - conserved hypothetical protein [Ricinus communis]
5 Hb_183192_010 0.1848064686 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
6 Hb_001459_040 0.1865914769 - - Ankyrin repeat-containing protein [Medicago truncatula]
7 Hb_001541_190 0.1871227432 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
8 Hb_008250_020 0.1878314151 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
9 Hb_001430_010 0.1878460201 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
10 Hb_002048_100 0.1915914743 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
11 Hb_005332_130 0.1918025371 - - Mavicyanin, putative [Ricinus communis]
12 Hb_004970_070 0.1955321562 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
13 Hb_007904_290 0.1961156877 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
14 Hb_000134_030 0.2007681297 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
15 Hb_000395_120 0.2015015594 - - Stellacyanin, putative [Ricinus communis]
16 Hb_000193_060 0.2052493518 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
17 Hb_000594_110 0.207619384 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
18 Hb_002007_070 0.2093949433 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
19 Hb_001514_250 0.2094185632 - - GAST1 protein precursor, putative [Ricinus communis]
20 Hb_005048_120 0.2095140204 - - -

Gene co-expression network

sample Hb_001775_090 Hb_001775_090 Hb_173271_010 Hb_173271_010 Hb_001775_090--Hb_173271_010 Hb_000577_050 Hb_000577_050 Hb_001775_090--Hb_000577_050 Hb_000162_130 Hb_000162_130 Hb_001775_090--Hb_000162_130 Hb_183192_010 Hb_183192_010 Hb_001775_090--Hb_183192_010 Hb_001459_040 Hb_001459_040 Hb_001775_090--Hb_001459_040 Hb_001541_190 Hb_001541_190 Hb_001775_090--Hb_001541_190 Hb_173271_010--Hb_000162_130 Hb_005048_120 Hb_005048_120 Hb_173271_010--Hb_005048_120 Hb_173271_010--Hb_001459_040 Hb_002133_010 Hb_002133_010 Hb_173271_010--Hb_002133_010 Hb_064885_010 Hb_064885_010 Hb_173271_010--Hb_064885_010 Hb_000656_320 Hb_000656_320 Hb_000577_050--Hb_000656_320 Hb_006060_010 Hb_006060_010 Hb_000577_050--Hb_006060_010 Hb_003599_060 Hb_003599_060 Hb_000577_050--Hb_003599_060 Hb_002217_370 Hb_002217_370 Hb_000577_050--Hb_002217_370 Hb_000577_050--Hb_001541_190 Hb_002007_070 Hb_002007_070 Hb_000162_130--Hb_002007_070 Hb_155946_030 Hb_155946_030 Hb_000162_130--Hb_155946_030 Hb_001579_070 Hb_001579_070 Hb_000162_130--Hb_001579_070 Hb_000959_020 Hb_000959_020 Hb_000162_130--Hb_000959_020 Hb_000680_180 Hb_000680_180 Hb_000162_130--Hb_000680_180 Hb_000003_240 Hb_000003_240 Hb_000162_130--Hb_000003_240 Hb_009979_010 Hb_009979_010 Hb_183192_010--Hb_009979_010 Hb_004495_010 Hb_004495_010 Hb_183192_010--Hb_004495_010 Hb_001628_020 Hb_001628_020 Hb_183192_010--Hb_001628_020 Hb_001369_670 Hb_001369_670 Hb_183192_010--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_183192_010--Hb_029689_010 Hb_012022_020 Hb_012022_020 Hb_183192_010--Hb_012022_020 Hb_113676_010 Hb_113676_010 Hb_001459_040--Hb_113676_010 Hb_137349_010 Hb_137349_010 Hb_001459_040--Hb_137349_010 Hb_055277_010 Hb_055277_010 Hb_001459_040--Hb_055277_010 Hb_108670_010 Hb_108670_010 Hb_001459_040--Hb_108670_010 Hb_004112_060 Hb_004112_060 Hb_001459_040--Hb_004112_060 Hb_000069_300 Hb_000069_300 Hb_001541_190--Hb_000069_300 Hb_001307_020 Hb_001307_020 Hb_001541_190--Hb_001307_020 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_000175_300 Hb_000175_300 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87318 9.84116 19.6212 11.6198 0 1.67297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.817033 0.651845 0 0.61342 0.83025

CAGE analysis