Hb_001775_110

Information

Type -
Description -
Location Contig1775: 99788-102196
Sequence    

Annotation

kegg
ID cit:102610147
description probable ribosome biogenesis protein RLP24-like
nr
ID XP_012076201.1
description PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
swissprot
ID O22165
description Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1
trembl
ID A0A067KE36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11260 PE=4 SV=1
Gene Ontology
ID GO:0042254
description probable ribosome biogenesis protein rlp24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17042: 99701-103311
cDNA
(Sanger)
(ID:Location)		 014_L12.ab1: 99885-103311 , 030_I21.ab1: 100408-103264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_110 0.0 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
2 Hb_000398_040 0.0578737747 - - Auxin response factor, putative [Ricinus communis]
3 Hb_001083_020 0.0584318296 - - -
4 Hb_000046_290 0.0764761522 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
5 Hb_001360_050 0.08107723 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
6 Hb_011909_100 0.082752095 - - conserved hypothetical protein [Ricinus communis]
7 Hb_114336_020 0.0836700957 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
8 Hb_017948_010 0.0856234493 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
9 Hb_002471_080 0.085870171 - - oxidoreductase, putative [Ricinus communis]
10 Hb_000680_140 0.0878395134 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
11 Hb_009393_210 0.0894607486 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
12 Hb_004724_340 0.0911736787 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
13 Hb_012675_060 0.094398672 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
14 Hb_010080_090 0.0945335277 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
15 Hb_001218_040 0.0947886608 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
16 Hb_000224_140 0.0950343506 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_017225_020 0.0952850193 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
18 Hb_001396_100 0.0953291481 - - DNA binding protein, putative [Ricinus communis]
19 Hb_012753_160 0.0967386459 - - ara4-interacting protein, putative [Ricinus communis]
20 Hb_000841_020 0.096776601 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]

Gene co-expression network

sample Hb_001775_110 Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_001775_110--Hb_000398_040 Hb_001083_020 Hb_001083_020 Hb_001775_110--Hb_001083_020 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_114336_020 Hb_114336_020 Hb_001775_110--Hb_114336_020 Hb_009113_070 Hb_009113_070 Hb_000398_040--Hb_009113_070 Hb_000841_020 Hb_000841_020 Hb_000398_040--Hb_000841_020 Hb_000398_040--Hb_001083_020 Hb_000398_040--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_000398_040--Hb_011534_030 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_012675_060 Hb_012675_060 Hb_001083_020--Hb_012675_060 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210 Hb_002471_080 Hb_002471_080 Hb_000046_290--Hb_002471_080 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_001360_050--Hb_012675_060 Hb_012675_050 Hb_012675_050 Hb_011909_100--Hb_012675_050 Hb_011909_100--Hb_001083_020 Hb_008554_070 Hb_008554_070 Hb_011909_100--Hb_008554_070 Hb_103118_010 Hb_103118_010 Hb_011909_100--Hb_103118_010 Hb_000962_040 Hb_000962_040 Hb_011909_100--Hb_000962_040 Hb_001235_030 Hb_001235_030 Hb_114336_020--Hb_001235_030 Hb_172932_010 Hb_172932_010 Hb_114336_020--Hb_172932_010 Hb_114336_020--Hb_011534_030 Hb_114336_020--Hb_027625_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6477 4.34544 10.5804 10.2275 15.9832 19.6195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.4772 47.0996 38.3491 17.4955 19.3701

CAGE analysis