Hb_001776_010

Information

Type -
Description -
Location Contig1776: 12246-14615
Sequence    

Annotation

kegg
ID rcu:RCOM_1257640
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_012092541.1
description PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
swissprot
ID Q9LTC0
description Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1
trembl
ID A0A067J9M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05292 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17052: 13052-14155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_010 0.0 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
2 Hb_000331_510 0.1583328301 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
3 Hb_000161_240 0.1624332305 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
4 Hb_008749_020 0.1656362329 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004041_100 0.1666354589 - - -
6 Hb_000094_150 0.1682826215 - - -
7 Hb_001195_140 0.1698320221 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
8 Hb_001103_060 0.17165629 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
9 Hb_001500_070 0.1733255414 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002235_050 0.1750628238 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
11 Hb_005504_030 0.177355885 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
12 Hb_000345_320 0.1774277792 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
13 Hb_017914_010 0.1794782978 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
14 Hb_008053_060 0.1798500314 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
15 Hb_000165_070 0.1805220204 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
16 Hb_001950_110 0.1813400682 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
17 Hb_004096_220 0.1820710789 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
18 Hb_004162_220 0.1830149665 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
19 Hb_000227_330 0.1834259661 - - Acyl-CoA synthetase [Ricinus communis]
20 Hb_083078_010 0.1858949931 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]

Gene co-expression network

sample Hb_001776_010 Hb_001776_010 Hb_000331_510 Hb_000331_510 Hb_001776_010--Hb_000331_510 Hb_000161_240 Hb_000161_240 Hb_001776_010--Hb_000161_240 Hb_008749_020 Hb_008749_020 Hb_001776_010--Hb_008749_020 Hb_004041_100 Hb_004041_100 Hb_001776_010--Hb_004041_100 Hb_000094_150 Hb_000094_150 Hb_001776_010--Hb_000094_150 Hb_001195_140 Hb_001195_140 Hb_001776_010--Hb_001195_140 Hb_006816_480 Hb_006816_480 Hb_000331_510--Hb_006816_480 Hb_001571_060 Hb_001571_060 Hb_000331_510--Hb_001571_060 Hb_000205_250 Hb_000205_250 Hb_000331_510--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_000331_510--Hb_000345_320 Hb_000666_010 Hb_000666_010 Hb_000331_510--Hb_000666_010 Hb_000227_330 Hb_000227_330 Hb_000331_510--Hb_000227_330 Hb_000007_410 Hb_000007_410 Hb_000161_240--Hb_000007_410 Hb_104920_010 Hb_104920_010 Hb_000161_240--Hb_104920_010 Hb_012799_150 Hb_012799_150 Hb_000161_240--Hb_012799_150 Hb_004117_270 Hb_004117_270 Hb_000161_240--Hb_004117_270 Hb_158445_020 Hb_158445_020 Hb_000161_240--Hb_158445_020 Hb_000258_090 Hb_000258_090 Hb_000161_240--Hb_000258_090 Hb_000625_030 Hb_000625_030 Hb_008749_020--Hb_000625_030 Hb_008749_020--Hb_004041_100 Hb_000907_150 Hb_000907_150 Hb_008749_020--Hb_000907_150 Hb_000406_090 Hb_000406_090 Hb_008749_020--Hb_000406_090 Hb_000720_090 Hb_000720_090 Hb_008749_020--Hb_000720_090 Hb_001500_070 Hb_001500_070 Hb_008749_020--Hb_001500_070 Hb_000347_110 Hb_000347_110 Hb_004041_100--Hb_000347_110 Hb_004041_100--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_004041_100--Hb_000181_020 Hb_000173_260 Hb_000173_260 Hb_004041_100--Hb_000173_260 Hb_004041_100--Hb_001500_070 Hb_002010_090 Hb_002010_090 Hb_000094_150--Hb_002010_090 Hb_000256_160 Hb_000256_160 Hb_000094_150--Hb_000256_160 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_000261_310 Hb_000261_310 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_001840_110 Hb_001840_110 Hb_001195_140--Hb_001840_110 Hb_083078_010 Hb_083078_010 Hb_001195_140--Hb_083078_010 Hb_001195_140--Hb_000161_240 Hb_004064_060 Hb_004064_060 Hb_001195_140--Hb_004064_060 Hb_001205_180 Hb_001205_180 Hb_001195_140--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.376133 2.48987 2.97744 1.42048 0.35949 0.272788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56891 0.656524 0.0984522 3.65085 1.80847

CAGE analysis