Hb_001776_060

Information

Type -
Description -
Location Contig1776: 65509-70529
Sequence    

Annotation

kegg
ID rcu:RCOM_1165760
description DNA binding protein, putative
nr
ID XP_012075955.1
description PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
swissprot
ID Q9LTJ1
description Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1
trembl
ID A0A067KHJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11043 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17062: 65534-70282 , PASA_asmbl_17063: 70283-70481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_060 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
2 Hb_012384_030 0.0489601359 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
3 Hb_000260_680 0.0564902442 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
4 Hb_000144_070 0.0584197774 - - conserved hypothetical protein [Ricinus communis]
5 Hb_032202_080 0.0588721495 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
6 Hb_002217_110 0.0642111343 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
7 Hb_007290_030 0.0716527085 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
8 Hb_001153_210 0.0740338459 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
9 Hb_000402_120 0.0743333437 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
10 Hb_000239_060 0.0747393875 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003579_050 0.0749730891 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
12 Hb_000339_040 0.0760320824 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
13 Hb_000789_320 0.0782748297 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
14 Hb_013394_030 0.078301688 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
15 Hb_001751_140 0.0786202144 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
16 Hb_000866_410 0.0787586431 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
17 Hb_000959_230 0.079440731 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
18 Hb_000352_350 0.0809839887 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
19 Hb_138435_010 0.0810046623 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
20 Hb_002067_030 0.0811771053 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_060 Hb_001776_060 Hb_012384_030 Hb_012384_030 Hb_001776_060--Hb_012384_030 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_000144_070 Hb_000144_070 Hb_001776_060--Hb_000144_070 Hb_032202_080 Hb_032202_080 Hb_001776_060--Hb_032202_080 Hb_002217_110 Hb_002217_110 Hb_001776_060--Hb_002217_110 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030 Hb_000402_120 Hb_000402_120 Hb_012384_030--Hb_000402_120 Hb_000866_410 Hb_000866_410 Hb_012384_030--Hb_000866_410 Hb_003929_280 Hb_003929_280 Hb_012384_030--Hb_003929_280 Hb_012384_030--Hb_002217_110 Hb_003927_040 Hb_003927_040 Hb_012384_030--Hb_003927_040 Hb_000331_110 Hb_000331_110 Hb_000260_680--Hb_000331_110 Hb_000260_680--Hb_002217_110 Hb_079526_030 Hb_079526_030 Hb_000260_680--Hb_079526_030 Hb_001153_210 Hb_001153_210 Hb_000260_680--Hb_001153_210 Hb_005779_010 Hb_005779_010 Hb_000260_680--Hb_005779_010 Hb_013394_030 Hb_013394_030 Hb_000144_070--Hb_013394_030 Hb_000339_040 Hb_000339_040 Hb_000144_070--Hb_000339_040 Hb_000789_320 Hb_000789_320 Hb_000144_070--Hb_000789_320 Hb_000144_070--Hb_012384_030 Hb_000352_350 Hb_000352_350 Hb_000144_070--Hb_000352_350 Hb_000457_230 Hb_000457_230 Hb_032202_080--Hb_000457_230 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_001405_190 Hb_001405_190 Hb_032202_080--Hb_001405_190 Hb_004837_180 Hb_004837_180 Hb_002217_110--Hb_004837_180 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_002217_110--Hb_003929_280 Hb_007290_030--Hb_000352_350 Hb_001761_120 Hb_001761_120 Hb_007290_030--Hb_001761_120 Hb_000227_270 Hb_000227_270 Hb_007290_030--Hb_000227_270 Hb_000239_060 Hb_000239_060 Hb_007290_030--Hb_000239_060 Hb_001635_040 Hb_001635_040 Hb_007290_030--Hb_001635_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7045 10.0021 15.9354 7.90257 10.4201 8.39929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.42746 9.30938 6.13748 5.66486 8.69355

CAGE analysis