Hb_001776_070

Information

Type -
Description -
Location Contig1776: 75084-77507
Sequence    

Annotation

kegg
ID rcu:RCOM_1165880
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012075958.1
description PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
swissprot
ID P52409
description Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1
trembl
ID A0A067KQC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11045 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17064: 75201-77602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_070 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
2 Hb_010164_020 0.085102893 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
3 Hb_000696_030 0.0944920491 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
4 Hb_027556_060 0.0980323796 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
5 Hb_005679_110 0.0994324576 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
6 Hb_001349_020 0.1126683632 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
7 Hb_005144_080 0.1157300084 - - Serine carboxypeptidase, putative [Ricinus communis]
8 Hb_001252_050 0.1177795413 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
9 Hb_002871_050 0.1220092358 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
10 Hb_013358_030 0.12230004 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
11 Hb_003875_040 0.1228791531 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
12 Hb_000111_120 0.1240935774 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_001002_090 0.1259543177 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
14 Hb_055440_010 0.1263769949 - - protein binding protein, putative [Ricinus communis]
15 Hb_000696_250 0.1278934138 - - PREDICTED: patellin-6 [Jatropha curcas]
16 Hb_009767_030 0.1289453352 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
17 Hb_001157_190 0.1294809114 - - PREDICTED: protein YLS3 [Jatropha curcas]
18 Hb_000411_020 0.1304521196 - - cytochrome P450, putative [Ricinus communis]
19 Hb_146901_020 0.1319440843 - - -
20 Hb_005357_120 0.1342240725 transcription factor TF Family: MYB-related -

Gene co-expression network

sample Hb_001776_070 Hb_001776_070 Hb_010164_020 Hb_010164_020 Hb_001776_070--Hb_010164_020 Hb_000696_030 Hb_000696_030 Hb_001776_070--Hb_000696_030 Hb_027556_060 Hb_027556_060 Hb_001776_070--Hb_027556_060 Hb_005679_110 Hb_005679_110 Hb_001776_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_001776_070--Hb_001349_020 Hb_005144_080 Hb_005144_080 Hb_001776_070--Hb_005144_080 Hb_000479_230 Hb_000479_230 Hb_010164_020--Hb_000479_230 Hb_002871_050 Hb_002871_050 Hb_010164_020--Hb_002871_050 Hb_000111_120 Hb_000111_120 Hb_010164_020--Hb_000111_120 Hb_011129_020 Hb_011129_020 Hb_010164_020--Hb_011129_020 Hb_000509_090 Hb_000509_090 Hb_010164_020--Hb_000509_090 Hb_001157_190 Hb_001157_190 Hb_000696_030--Hb_001157_190 Hb_000696_030--Hb_005679_110 Hb_005839_030 Hb_005839_030 Hb_000696_030--Hb_005839_030 Hb_001195_740 Hb_001195_740 Hb_000696_030--Hb_001195_740 Hb_000696_030--Hb_005144_080 Hb_003216_140 Hb_003216_140 Hb_027556_060--Hb_003216_140 Hb_146901_020 Hb_146901_020 Hb_027556_060--Hb_146901_020 Hb_000152_590 Hb_000152_590 Hb_027556_060--Hb_000152_590 Hb_001247_090 Hb_001247_090 Hb_027556_060--Hb_001247_090 Hb_000411_020 Hb_000411_020 Hb_027556_060--Hb_000411_020 Hb_005679_110--Hb_002871_050 Hb_005679_110--Hb_001349_020 Hb_000482_070 Hb_000482_070 Hb_005679_110--Hb_000482_070 Hb_001345_020 Hb_001345_020 Hb_005679_110--Hb_001345_020 Hb_001349_020--Hb_001345_020 Hb_000017_320 Hb_000017_320 Hb_001349_020--Hb_000017_320 Hb_005730_070 Hb_005730_070 Hb_001349_020--Hb_005730_070 Hb_000696_250 Hb_000696_250 Hb_001349_020--Hb_000696_250 Hb_002003_010 Hb_002003_010 Hb_001349_020--Hb_002003_010 Hb_002025_380 Hb_002025_380 Hb_005144_080--Hb_002025_380 Hb_006277_030 Hb_006277_030 Hb_005144_080--Hb_006277_030 Hb_004282_010 Hb_004282_010 Hb_005144_080--Hb_004282_010 Hb_005731_070 Hb_005731_070 Hb_005144_080--Hb_005731_070 Hb_005144_080--Hb_005839_030 Hb_005144_080--Hb_011129_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0471546 5.43695 15.6055 16.2994 0.0567313 0.066919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0268234 0 0 14.6666 2.57395

CAGE analysis