Hb_001776_090

Information

Type -
Description -
Location Contig1776: 84248-86698
Sequence    

Annotation

kegg
ID rcu:RCOM_1166010
description mitochondrial import inner membrane translocase subunit tim9, putative
nr
ID NP_001295685.1
description mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
swissprot
ID Q9XGX9
description Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2
trembl
ID D6BR56
description Mitochondrial import inner membrane translocase OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial import inner membrane translocase subunit tim9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17068: 84217-86612 , PASA_asmbl_17070: 85890-86361
cDNA
(Sanger)
(ID:Location)		 015_H07.ab1: 84483-86612

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_090 0.0 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
2 Hb_001405_050 0.0900868238 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
3 Hb_001545_040 0.0905000678 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
4 Hb_007154_020 0.0923336685 - - -
5 Hb_001828_090 0.0945617205 - - prohibitin, putative [Ricinus communis]
6 Hb_011381_060 0.0950409555 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
7 Hb_001379_060 0.0969941777 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
8 Hb_008112_040 0.1002128973 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
9 Hb_028841_030 0.1069801867 - - -
10 Hb_000473_040 0.1109787093 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
11 Hb_001512_070 0.1116485982 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
12 Hb_000139_350 0.1117646675 - - AtGCP3 interacting protein 1 [Theobroma cacao]
13 Hb_007101_150 0.1123339591 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
14 Hb_000023_230 0.1134139119 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
15 Hb_003939_080 0.1137502985 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000684_090 0.114766906 transcription factor TF Family: S1Fa-like -
17 Hb_001934_030 0.1149630073 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
18 Hb_011360_140 0.1151524917 - - 40S ribosomal protein S19, putative [Ricinus communis]
19 Hb_002232_440 0.1161061316 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
20 Hb_004204_070 0.1164104309 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_090 Hb_001776_090 Hb_001405_050 Hb_001405_050 Hb_001776_090--Hb_001405_050 Hb_001545_040 Hb_001545_040 Hb_001776_090--Hb_001545_040 Hb_007154_020 Hb_007154_020 Hb_001776_090--Hb_007154_020 Hb_001828_090 Hb_001828_090 Hb_001776_090--Hb_001828_090 Hb_011381_060 Hb_011381_060 Hb_001776_090--Hb_011381_060 Hb_001379_060 Hb_001379_060 Hb_001776_090--Hb_001379_060 Hb_143766_090 Hb_143766_090 Hb_001405_050--Hb_143766_090 Hb_019962_030 Hb_019962_030 Hb_001405_050--Hb_019962_030 Hb_002681_040 Hb_002681_040 Hb_001405_050--Hb_002681_040 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020 Hb_001545_040--Hb_011381_060 Hb_042202_010 Hb_042202_010 Hb_001545_040--Hb_042202_010 Hb_000025_230 Hb_000025_230 Hb_001545_040--Hb_000025_230 Hb_028841_030 Hb_028841_030 Hb_001545_040--Hb_028841_030 Hb_168878_010 Hb_168878_010 Hb_001545_040--Hb_168878_010 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_007101_150 Hb_007101_150 Hb_001828_090--Hb_007101_150 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001828_090--Hb_001379_060 Hb_001512_070 Hb_001512_070 Hb_001828_090--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001828_090--Hb_000684_090 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_011381_060--Hb_028841_030 Hb_001379_060--Hb_007101_150 Hb_002205_080 Hb_002205_080 Hb_001379_060--Hb_002205_080 Hb_001379_060--Hb_001512_070 Hb_001379_060--Hb_000684_090 Hb_000270_270 Hb_000270_270 Hb_001379_060--Hb_000270_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.988 49.0631 75.0367 17.6147 118.18 75.9177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.073 208.382 77.5209 32.0761 13.1127

CAGE analysis