Hb_001776_110

Information

Type -
Description -
Location Contig1776: 91092-93212
Sequence    

Annotation

kegg
ID rcu:RCOM_1166160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012075961.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
swissprot
ID Q940Q2
description Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1
trembl
ID B9T3N7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1166160 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17073: 92022-92211 , PASA_asmbl_17074: 92331-93319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
2 Hb_003540_040 0.0529361065 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
3 Hb_006569_020 0.0691411384 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
4 Hb_010436_070 0.0708243151 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
5 Hb_004662_030 0.0729581176 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
6 Hb_002097_110 0.0732392723 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000029_030 0.0736800752 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
8 Hb_125000_010 0.0738793968 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_118419_020 0.0739368029 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
10 Hb_076787_010 0.0743851751 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
11 Hb_009711_030 0.0746684445 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
12 Hb_012340_030 0.0748514359 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
13 Hb_022250_040 0.0756330718 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
14 Hb_168918_020 0.0761884848 - - pectin acetylesterase, putative [Ricinus communis]
15 Hb_159558_030 0.0777068677 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
16 Hb_002272_250 0.0779738891 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000500_130 0.079595862 - - small GTPase [Hevea brasiliensis]
18 Hb_005063_040 0.0827687843 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
19 Hb_000032_570 0.0843584712 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
20 Hb_004223_130 0.0851372477 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001776_110 Hb_001776_110 Hb_003540_040 Hb_003540_040 Hb_001776_110--Hb_003540_040 Hb_006569_020 Hb_006569_020 Hb_001776_110--Hb_006569_020 Hb_010436_070 Hb_010436_070 Hb_001776_110--Hb_010436_070 Hb_004662_030 Hb_004662_030 Hb_001776_110--Hb_004662_030 Hb_002097_110 Hb_002097_110 Hb_001776_110--Hb_002097_110 Hb_000029_030 Hb_000029_030 Hb_001776_110--Hb_000029_030 Hb_125000_010 Hb_125000_010 Hb_003540_040--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_003540_040--Hb_022250_040 Hb_000392_270 Hb_000392_270 Hb_003540_040--Hb_000392_270 Hb_009711_030 Hb_009711_030 Hb_003540_040--Hb_009711_030 Hb_003540_040--Hb_002097_110 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_006569_020--Hb_022250_040 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_006569_020--Hb_004662_030 Hb_010436_070--Hb_125000_010 Hb_118419_020 Hb_118419_020 Hb_010436_070--Hb_118419_020 Hb_000832_140 Hb_000832_140 Hb_010436_070--Hb_000832_140 Hb_010436_070--Hb_009711_030 Hb_010436_070--Hb_002097_110 Hb_000172_370 Hb_000172_370 Hb_010436_070--Hb_000172_370 Hb_004662_030--Hb_002097_110 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020 Hb_004662_030--Hb_022250_040 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_002368_050 Hb_002368_050 Hb_000029_030--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_000029_030--Hb_006693_030 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_011224_080 Hb_011224_080 Hb_000029_030--Hb_011224_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71245 1.16219 1.65515 1.81149 5.86309 6.35505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.55262 6.50197 5.44273 2.21393 1.7193

CAGE analysis