Hb_001776_140

Information

Type -
Description -
Location Contig1776: 103066-107476
Sequence    

Annotation

kegg
ID tcc:TCM_041611
description GTP-binding protein Obg/CgtA, putative isoform 1
nr
ID XP_012093131.1
description PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID F4HSD4
description Probable GTP-binding protein OBGM, mitochondrial OS=Arabidopsis thaliana GN=ATOBGM PE=2 SV=1
trembl
ID A0A067L7W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16340 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable gtp-binding protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17076: 103146-107445 , PASA_asmbl_17077: 105139-107396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_140 0.0 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_000428_050 0.0565100471 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
3 Hb_000120_790 0.0636957415 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
4 Hb_001675_180 0.0706019263 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
5 Hb_001545_120 0.0749735632 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
6 Hb_044728_010 0.0776531926 - - -
7 Hb_000243_030 0.0795587901 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
8 Hb_004841_010 0.0799272665 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
9 Hb_002876_110 0.0806096696 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012022_160 0.0807162469 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
11 Hb_000342_130 0.0818571953 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
12 Hb_000010_330 0.0842425581 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
13 Hb_000856_110 0.0845327428 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
14 Hb_003010_030 0.0856196771 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
15 Hb_002200_080 0.0857214426 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
16 Hb_002044_080 0.0869870731 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
17 Hb_008695_180 0.0873269845 - - eukaryotic translation initiation factor [Hevea brasiliensis]
18 Hb_002701_020 0.0883084658 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
19 Hb_000173_290 0.0886476473 - - guanylate kinase, putative [Ricinus communis]
20 Hb_000165_250 0.0888964615 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001776_140 Hb_001776_140 Hb_000428_050 Hb_000428_050 Hb_001776_140--Hb_000428_050 Hb_000120_790 Hb_000120_790 Hb_001776_140--Hb_000120_790 Hb_001675_180 Hb_001675_180 Hb_001776_140--Hb_001675_180 Hb_001545_120 Hb_001545_120 Hb_001776_140--Hb_001545_120 Hb_044728_010 Hb_044728_010 Hb_001776_140--Hb_044728_010 Hb_000243_030 Hb_000243_030 Hb_001776_140--Hb_000243_030 Hb_012022_160 Hb_012022_160 Hb_000428_050--Hb_012022_160 Hb_000010_330 Hb_000010_330 Hb_000428_050--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_000428_050--Hb_007904_200 Hb_003195_070 Hb_003195_070 Hb_000428_050--Hb_003195_070 Hb_000428_050--Hb_001675_180 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_001675_180--Hb_000010_330 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_002044_080 Hb_002044_080 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_004600_040 Hb_004600_040 Hb_001545_120--Hb_004600_040 Hb_009767_110 Hb_009767_110 Hb_044728_010--Hb_009767_110 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_000056_200 Hb_000056_200 Hb_000243_030--Hb_000056_200 Hb_063716_050 Hb_063716_050 Hb_000243_030--Hb_063716_050 Hb_006541_030 Hb_006541_030 Hb_000243_030--Hb_006541_030 Hb_000398_180 Hb_000398_180 Hb_000243_030--Hb_000398_180 Hb_002226_070 Hb_002226_070 Hb_000243_030--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_000243_030--Hb_004440_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1999 7.9805 5.86001 8.78356 17.5941 18.4245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4221 19.1054 14.4981 6.96825 12.1002

CAGE analysis